Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi348g00013 ATGAATTTATTTTCTGCAATTACTCTTGTGTTTGTGTTGCTTATTCCATCTTCAATTGCACAATTATCACAAACTGAAACCAGAATTCTCTTCCAAGTCCAGAAGCTTCTAGAATATCCTCAAGTTCTTCAAGGATGGAACAACTGGACAAACTTCTGCTTCCTCCCTCCTTCACCATCACTCATAATAGTCTGTTCCAACGGCCGCGTAACCGAATTAACCATCATCGGAAACCGAACTTCTCCATCTTCACACAGTTCAGAACCTTTTCAAGCACTTTCCGGAACTTTCTCAACTGATTCATTTTTCACTGTTTTAACAAAACTTTCAAATTTGAAGATTCTGTCATTAGTTTCATTAGGTCTATGGGGTCCATTACCAGAAAAAATCAACAGGTTTTCATCTCTTGAAATTCTCAACATTAGTTCGAATTTCATTTCCGATGAAATTCCGCGTTCAATATCTTCGATGAAGAACTTGAAGAGTGTTGTTTTGGCTGATAACCTTTTAAATGGAAGTGTTCCGGATCTTAAAAGTTTAGCTTCTCTTGAAGAGGTTAATCTTGATGGAAATAAACTCGGTCCGGAATTTCCTTCTATTGGGAACAATATTGTGAAAATCATCTTGAGAAAAAACTCCATAACATCTCAGATTCCTCTTGATCTTTCGAATTTCGAGAAACTTCAAATTTTCGATGTTTCTTCGAATAATTTGATCGGGAGAATTCCGATTTCTATATTCTCTTTACCTTCACTTCATTACCTGAATTTATCTTCAAACAAATTAAGTGGAAACATCTCAACGAATTCGCGATGTAGTTCATCTTCATCGTTGAATTATGTTGATATTTCGCGTAATTTTCTAGTAGGAAAATTACCGTCATGCATGGTGAAATCGAAGGCGAAAGTGTTGTATTCATGGAATTGTTTGTCGACGAAAAGTTCGAATGATGAACAACATTCTTTATCATATTGCAAAAAAGATGCGGCTTTGGCTGTTAAGCCTCCTAAGAGAAAGGTGGAGAAGGGATCAAGTATGAAATTAGGACTTGTGCTTGTTATTGTTGGAGGTGTTGTGGGAATTGCTTGTGTTTTGGCTTTGATCATTGTGTTTGTCTTGTGGAGGGCCAAGCCAGAAAGATTGAATCATAATATGGATAGATCTGTTGCTCATAAGGTTTCAGAAAAATCAAATATGAATGCAAGACATGTTCCTCAAACAATGAGGCTAGGTACACATGGACAGCCACCATACAATATTTTCACAGAAGAAGAAATTGAAGATGCAACAAACAACTTTGACCAGTCAAATCTAATAGGAGAAGGATCACAAGGACAGATATATAAAGGTTGGTTGAGAAATGGTTCAGTGGTCCTGATTAACAGTATAAAGATAAAGCAGAAGGGTTTACCACATAGCATTATGCAGCAATTAGATGTATTACAAAATTTGAGGCATAGACATATGGTGAGTGTTCTAGGACATTGTCTCATTACTCATCAGGATCCTCCTCAAGTAACAAGCACTGTCTTCATTGTACATGAATACATCTCAAATGTGTCTTTGAGAGATCAACTTACAGATGGGAAAAAGAAGGATATGCTGAAATGGCCACAAAGAATGGCAATAAGCATAGGAATTGCAAGAGGAGTTCAGTTCTTGCATACAGGTGTTGCTCCTGGAGTATTTGGCAACAATTTAAAGATTGAGAATATTTTGTTGGATGATAGTCTCAATGCAAAAGTCAGTGGATACAGAATTCCATTGCCATCCAAGAACACAGTTAATGAACAAAGTGATGCAGAAAAGGAAGATATTTATCAGCTAGGTGTTATTCTACTTGAAGTCATTACTGGTAGACAAATTGCATCCTCCAGTGAAGTAGAGCAGCTCAAGGATGAGCTTGAAAGAAGTTCATCAGAACCACCATCATCTATACTAAGAAGTACAATTGATCCTTCTCTGAGAGGGAGTTATGCCTATGAATCAATGAATACTGCAGTTCAGATTACCATCAATTGTCTCTCTAAGGTTTCTAGTAAGCGTCCTTCAATAGAGGATGTGCTCTGGAATTTACAGTATTCAATGCAAGTTCAAGAGTCTTGGACTAGCAGTGGGAATCTCAGCACAAAATTTTAA 2139 0.3698 MNLFSAITLVFVLLIPSSIAQLSQTETRILFQVQKLLEYPQVLQGWNNWTNFCFLPPSPSLIIVCSNGRVTELTIIGNRTSPSSHSSEPFQALSGTFSTDSFFTVLTKLSNLKILSLVSLGLWGPLPEKINRFSSLEILNISSNFISDEIPRSISSMKNLKSVVLADNLLNGSVPDLKSLASLEEVNLDGNKLGPEFPSIGNNIVKIILRKNSITSQIPLDLSNFEKLQIFDVSSNNLIGRIPISIFSLPSLHYLNLSSNKLSGNISTNSRCSSSSSLNYVDISRNFLVGKLPSCMVKSKAKVLYSWNCLSTKSSNDEQHSLSYCKKDAALAVKPPKRKVEKGSSMKLGLVLVIVGGVVGIACVLALIIVFVLWRAKPERLNHNMDRSVAHKVSEKSNMNARHVPQTMRLGTHGQPPYNIFTEEEIEDATNNFDQSNLIGEGSQGQIYKGWLRNGSVVLINSIKIKQKGLPHSIMQQLDVLQNLRHRHMVSVLGHCLITHQDPPQVTSTVFIVHEYISNVSLRDQLTDGKKKDMLKWPQRMAISIGIARGVQFLHTGVAPGVFGNNLKIENILLDDSLNAKVSGYRIPLPSKNTVNEQSDAEKEDIYQLGVILLEVITGRQIASSSEVEQLKDELERSSSEPPSSILRSTIDPSLRGSYAYESMNTAVQITINCLSKVSSKRPSIEDVLWNLQYSMQVQESWTSSGNLSTKF 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi348g00013 712 SUPERFAMILY Protein kinase-like (PK-like) 413 692 IPR011009 -
Vivi348g00013 712 Gene3D Transferase(Phosphotransferase) domain 1 594 707 - -
Vivi348g00013 712 Gene3D Transferase(Phosphotransferase) domain 1 517 593 - -
Vivi348g00013 712 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 517 708 - -
Vivi348g00013 712 Gene3D Ribonuclease Inhibitor 203 331 IPR032675 -
Vivi348g00013 712 SUPERFAMILY L domain-like 64 310 - -
Vivi348g00013 712 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 23 200 - -
Vivi348g00013 712 Pfam Leucine Rich Repeat 135 156 IPR001611 GO:0005515
Vivi348g00013 712 Gene3D Phosphorylase Kinase; domain 1 391 516 - -
Vivi348g00013 712 Gene3D Ribonuclease Inhibitor 22 202 IPR032675 -
Vivi348g00013 712 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 93 693 - -
Vivi348g00013 712 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 201 292 - -
Vivi348g00013 712 ProSiteProfiles Protein kinase domain profile. 433 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi348g00013 712 Pfam Protein tyrosine and serine/threonine kinase 436 628 IPR001245 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi348g00013 18 632 Miscellaneous Gene Families AT2G02780 49.311 1.77e-178 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vivi348g00013 PK_Tyr_Ser-Thr 1.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi348g00013 - - cam:101490224 1082.4