Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi348g00008 ATGTCGCATTTGCATTTACAGCTACACTCACAAGCACCACCACTCTCTTCTTCTCCCTCTTCCACTTCTTCTCGTTTTTCTTTCCTCAAACTTTTCACAAACAACACTTTCTCTTTCTCTCAAACAAACTCTCTTCCTTTCAAACCCCTATCCATCAGATGCCGCCACTCTGACGTCTTTGAAACCACAACCAACCCTTCCTCCAACCCCAACAATAACCCTTCAGTTGGAGCTATACCACCTAGGGTTTATGTTGGTCATTCCATTTACAAAGGGAAGGCTGCTCTCACTATCACTCCTAGACCGCCTGAGTTCTTGCCTTTGGATTCAGGGGCATATAAGATATCTAGGGATGGTTATGTGCTGCTTCAGTTTGCTCCCTCGGTTGGTCCGCGCCAGTATGATTGGAATAGAAAACAGGTTTTCTCACTATCAGTGGATGAAATGGGAAGTGTGATTAGCCTTAGTGCAAGGGACTCTTGTGAATTTTTTCACGATCCTTACAAGGGAAAAAGTGACGAAGGCAAAGTCAGTAAGGTTTTGAAGGTTGAGCCTTTTCCGGATGGTTCTGGATTCTTCTTTAACCTAAGTGTTCAAAACAAGCTTGCGAACGTGGAAGAAAACATCACTCTCCCAGTAACAAAAGCAGAGTTATCAGTTTTGAGTGCAATTTTCAAGTTCATCATGCCGTACCTTCTTGGTTGGCATACCTTTGCAGACTCGATAACTCCGGAATATTCTGTGGCGGCGGCAAGTGTGGCAACCAATGCCAACCCGAAATATGGAGGAGACTATGAATGGAACAGATAG 810 0.4432 MSHLHLQLHSQAPPLSSSPSSTSSRFSFLKLFTNNTFSFSQTNSLPFKPLSIRCRHSDVFETTTNPSSNPNNNPSVGAIPPRVYVGHSIYKGKAALTITPRPPEFLPLDSGAYKISRDGYVLLQFAPSVGPRQYDWNRKQVFSLSVDEMGSVISLSARDSCEFFHDPYKGKSDEGKVSKVLKVEPFPDGSGFFFNLSVQNKLANVEENITLPVTKAELSVLSAIFKFIMPYLLGWHTFADSITPEYSVAAASVATNANPKYGGDYEWNR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi348g00008 269 Pfam Whirly transcription factor 89 223 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vivi348g00008 269 MobiDBLite consensus disorder prediction 1 20 - -
Vivi348g00008 269 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 43 269 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vivi348g00008 269 Gene3D Transcriptional Coactivator Pc4; Chain A 77 251 IPR009044 GO:0003677|GO:0006355
Vivi348g00008 269 SUPERFAMILY ssDNA-binding transcriptional regulator domain 81 269 IPR009044 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi348g00008 48 269 Whirly Transcription Factor Family AT1G14410 63.514 2.20e-104 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vivi348g00008 Whirly 1.1e-58 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi348g00008 K26559 - gmx:100789252 348.977