Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi348g00007 ATGATTCAAATGTTCCACCCTCCCTTTCGCTTTCTCACATTCCCATGCACAAAACCACCTCAATTAAATATTCACCTCCTCCTTTCCCTTCCCGCTCCAACCATCCTTTGCTCATCACTCAACGATGGTTCCTTTTCCATCCCAAAATCAACCCAGTTTGGTTATAGTCCTCCAGAGGATCTCTTTGGACTTGAGATGGAATTCAAACCAAGGAAAGCGAACTCGCATACAAGAGAACCAAGGTCATGGTTTGGACCAAATGGACAATATATCAGAGAGCTACCTTGTCCGAGTTGTCGAGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATTGAAAGATCTAGATCAGACTGTCCAAAATGTAATGGAAAGGGTTTATTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAATCTATCGATGAACGACCATGGGAGAGAGCTCAATCAATATCGCCACTCAAAGTGAAGGAAGACGATGAAGTTGACAAATTGGACATAAAGCTAGATGCAAAGAAAAAATCCAAACGTGTTTACAAGTCACCGTCTCCTGAAGTTGGATTGAAGATTAGCCGTTCTTTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAAACGAATGAAGATCATCCACCAGGATCCAGTTCTCGAGGCTCAAAGAGTGGATGCTATTAAGAAAGCCAAGAGAACTGTTTTAGCTAGAAAGCATGCTTCCAAAACTATGAAAGCATTCTTCAGCGATCCAATAAACCGTCAGAAAAGGAGCATCGCCATGAAAGGAGTGAAATTCTACTGTCAAAGCTGTGGACGCGAAGGACATAGGAGACACTACTGTCCGGAACTCAAGGATGGTTTGATTGAACGGCGATTCACTTGCAGGCTATGCGGCGAGAAAGGCCACAACAGAAGAACGTGCGATAAGTTAAGGATAAGCCATAGTGATGGGAAAGTTATAAAACATCACCGATGTAAAATATGTCGACAATATGGCCATAACAGAAGGACATGTCCACAAGTTGTTTCGAATAAAAGAATAGACAAGGCATCTCAAAGAGTATATATTTGTCGATTGTGTCAGGAAGAAGGACACAATATTAGGACATGTCCTAGAAGAATAGTTGATACTGAACATTCTCAAGAGTAA 1158 0.418 MIQMFHPPFRFLTFPCTKPPQLNIHLLLSLPAPTILCSSLNDGSFSIPKSTQFGYSPPEDLFGLEMEFKPRKANSHTREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKEDDEVDKLDIKLDAKKKSKRVYKSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHQDPVLEAQRVDAIKKAKRTVLARKHASKTMKAFFSDPINRQKRSIAMKGVKFYCQSCGREGHRRHYCPELKDGLIERRFTCRLCGEKGHNRRTCDKLRISHSDGKVIKHHRCKICRQYGHNRRTCPQVVSNKRIDKASQRVYICRLCQEEGHNIRTCPRRIVDTEHSQE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi348g00007 385 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 59 310 - -
Vivi348g00007 385 SMART c2hcfinal6 359 375 IPR001878 GO:0003676|GO:0008270
Vivi348g00007 385 SMART c2hcfinal6 296 312 IPR001878 GO:0003676|GO:0008270
Vivi348g00007 385 SMART c2hcfinal6 327 343 IPR001878 GO:0003676|GO:0008270
Vivi348g00007 385 SMART c2hcfinal6 269 285 IPR001878 GO:0003676|GO:0008270
Vivi348g00007 385 SUPERFAMILY Retrovirus zinc finger-like domains 267 313 IPR036875 GO:0003676|GO:0008270
Vivi348g00007 385 SUPERFAMILY Retrovirus zinc finger-like domains 322 376 IPR036875 GO:0003676|GO:0008270
Vivi348g00007 385 Gene3D - 319 385 - -
Vivi348g00007 385 Gene3D - 265 313 - -
Vivi348g00007 385 Pfam Zinc knuckle 358 374 IPR025829 -
Vivi348g00007 385 ProSiteProfiles Zinc finger CCHC-type profile. 270 285 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi348g00007 41 383 C2H2 Transcription Factor Family AT5G20220 62.890 5.70e-158 449