Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi348g00002 ATGGAGCTTACCACTGTGAAATCTGAACTAAGTCCAAGAAGTCATAGAATTCTCGTGTTGGATAATGATTCTGTTCAAAGTACGAAATGTGTGAAAAGGCGGAGAAGAGATTCGTCGGTGTTAGGAGGGAATGAACAACGAGGTGATGTATCAGAAATACAGCAGCCATTGAGTGGTCAATCCACTGCAACAACTGTGAAGAGAAGCTCAAAGTTTAGAGGTGTTAGTAGACATAGGTGGACCGGAAGGTATGAAGCTCATTTATGGGATAAAGGGACATGGAATCCTACTCAAAAGAAAAAAGGAAAACAAGTATATTTGGGTGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCGCTCAAGTATTGGGGAACATCGACTTTTACAAATTTCCCTGTACCAGACTACGAGAAAGAAATTGAGATAATGATAAATATGAGCAAAGAAGAGTATCTTGCTTCTTTGAGAAGAAGGAGCAGTGGTTTTTCTAGAGGTGTATCAAAATATAGAGGAGTAGCAAGACACCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTTTTCGGCAACAAGTATCTCTACCTCGGGACTTACGGTACACAAGAAGAGGCGGCTCGCGCGTACGATATTGCAGCCATTGAGTACCGAGGAATAAATGCAGTGACAAATTTTGACTTAAGCACTTACATCAGATGGTTAAGGCCAGGACCACAAGAACAAAAGCCAAGCACAGAACCTCAGGTACCATTTGCAGTGTCTAATTCAATCCAAACAAGAGTAAACATTGATGCATCCAACTCAACCATCAATCCAGAAAAGATTTTGCAAGTTGAAAATACAAAGAAGCAAAAGTTTTCAAATTCTATGATCCCTACTAAGCCGTCTTCGCCTACAGCATTAGGACTTCTCCTAAAATCTTCGGTGTTTAGAGAGTTAATGCAGAGAAATCTGAATTCGTCTAACGATGATGAACAAGAAGAAGTTGAATTGAAATATCCGCAAGAAGGGATTAGAGGGGTTTTCGATATTGACAACACGAGTAAGACTTTCTTGTGTTCTTCCAATATCAGCAGATTACCGAACTTGGTGTCAACAGAAGAGGGGTCATTTCCTATGTATCAAGCAGTATGGAATGGTGCTTCCAACATTTCTAACTGA 1176 0.4048 MELTTVKSELSPRSHRILVLDNDSVQSTKCVKRRRRDSSVLGGNEQRGDVSEIQQPLSGQSTATTVKRSSKFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGTSTFTNFPVPDYEKEIEIMINMSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGPQEQKPSTEPQVPFAVSNSIQTRVNIDASNSTINPEKILQVENTKKQKFSNSMIPTKPSSPTALGLLLKSSVFRELMQRNLNSSNDDEQEEVELKYPQEGIRGVFDIDNTSKTFLCSSNISRLPNLVSTEEGSFPMYQAVWNGASNISN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi348g00002 391 ProSiteProfiles AP2/ERF domain profile. 173 231 IPR001471 GO:0003700|GO:0006355
Vivi348g00002 391 Pfam AP2 domain 172 223 IPR001471 GO:0003700|GO:0006355
Vivi348g00002 391 Pfam AP2 domain 70 129 IPR001471 GO:0003700|GO:0006355
Vivi348g00002 391 PRINTS Ethylene responsive element binding protein signature 213 233 IPR001471 GO:0003700|GO:0006355
Vivi348g00002 391 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Vivi348g00002 391 CDD AP2 172 233 IPR001471 GO:0003700|GO:0006355
Vivi348g00002 391 SMART rav1_2 173 237 IPR001471 GO:0003700|GO:0006355
Vivi348g00002 391 SMART rav1_2 71 143 IPR001471 GO:0003700|GO:0006355
Vivi348g00002 391 ProSiteProfiles AP2/ERF domain profile. 71 137 IPR001471 GO:0003700|GO:0006355
Vivi348g00002 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 47 285 - -
Vivi348g00002 391 MobiDBLite consensus disorder prediction 44 64 - -
Vivi348g00002 391 SUPERFAMILY DNA-binding domain 70 138 IPR016177 GO:0003677
Vivi348g00002 391 FunFam AP2-like ethylene-responsive transcription factor 172 233 - -
Vivi348g00002 391 MobiDBLite consensus disorder prediction 29 64 - -
Vivi348g00002 391 SUPERFAMILY DNA-binding domain 172 233 IPR016177 GO:0003677
Vivi348g00002 391 Gene3D AP2/ERF domain 70 138 IPR036955 GO:0003700|GO:0006355
Vivi348g00002 391 Gene3D AP2/ERF domain 172 233 IPR036955 GO:0003700|GO:0006355
Vivi348g00002 391 FunFam AP2-like ethylene-responsive transcription factor 70 139 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi348g00002 67 235 AP2-EREBP Transcription Factor Family AT5G17430 70.414 3.98e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vivi348g00002 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi348g00002 - - gmx:100798483 579.711