Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi345g00021 ATGGCGTCGACACCGATTCAACCATACGGAGATTTGGATTCCACTTTGAGGGCCATGGCCGGCCGTGCTGAAGGTTTTGGCCGCCTTGCCATTGGTGGCCTCCACGGTCCTCTCTATTTGGTTACCTCCCTTTCAGATGATGGTCCTGGTTCACTTCGCGAAGGATGTCGTAGAAAGGAGCCGTTATGGATTGTTTTTGAGATTTCAGGTACAATTAATCTTTCATCATACCTGAATGTGTCCTCTCATAAGACAATAGATGGAAGAGGCCAGAGGATTAAATTGACTGGGAAAGGCTTAAGACTGAAAGAATGTGAGAATATAATTATATGCAACCTCGAGTTTGAGGGGGGAAGGGGTCATGATGTAGATGGGATTCAAATAAAACCGAATTCTAGGAATATTTGGATAGACCGCTGTAGTCTTCGAGATTATGATGATGGGCTTATAGACATCACAAGACAAAGCACGGATATCACTATATCTAGATGCTACTTTGCACAGCATGACAAGACCATGTTAATTGGTGCTAACCCGTTGCACGTCGGTGATAGATGCATCCGGGTGACGATTCATCATTGTTTCTTTGATGGAACACGGCAGAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTATAATAATTACATTAGAAACTGGGAAATCTATGCAATTTGTGCTAGTGTTGAGGCCCAGATATATTCCCAATGCAACATATATGAGGCAGGAACTAAGAAAAAGGCTTTTGAATTTTATACCGAAAAGGCGGAAGACAAAGAACATCAGGAGTCCGGCTTCATAATATCCGAAGGAGACATGCTTCTGAATGGTGCTCAGCCATGCATACCACCGGAATCTAAAGAAGAAATCATGTTTCATCCTAGTGAATATTACCCGACTTGGACAATGGAAGCGGCTACAGATTCTCTCAGAGAGGTTGTCCAGTTATGTACAGGTTGGCAGTCCGTTTGTAGACCAGTAGACAATATGTTATGA 999 0.4324 MASTPIQPYGDLDSTLRAMAGRAEGFGRLAIGGLHGPLYLVTSLSDDGPGSLREGCRRKEPLWIVFEISGTINLSSYLNVSSHKTIDGRGQRIKLTGKGLRLKECENIIICNLEFEGGRGHDVDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGANPLHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWEIYAICASVEAQIYSQCNIYEAGTKKKAFEFYTEKAEDKEHQESGFIISEGDMLLNGAQPCIPPESKEEIMFHPSEYYPTWTMEAATDSLREVVQLCTGWQSVCRPVDNML 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi345g00021 332 Gene3D - 9 318 IPR012334 -
Vivi345g00021 332 PANTHER PECTATE LYASE 18-RELATED 12 282 IPR045032 GO:0030570
Vivi345g00021 332 Pfam Pectate lyase 77 240 IPR002022 -
Vivi345g00021 332 SUPERFAMILY Pectin lyase-like 20 324 IPR011050 -
Vivi345g00021 332 PRINTS Pollen allergen Amb family signature 22 39 IPR018082 -
Vivi345g00021 332 PRINTS Pollen allergen Amb family signature 224 243 IPR018082 -
Vivi345g00021 332 PRINTS Pollen allergen Amb family signature 202 221 IPR018082 -
Vivi345g00021 332 SMART amb_all 34 247 IPR002022 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi345g00021 46 330 Polysaccharide Lyase AT3G55140 78.246 2.52e-176 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi345g00021 K01728 - gmx:100802068 606.29