Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi344g00029 ATGGAAGGTAAGGAAGAGGCGGTGAAGACGTTGGTTCCATCACAACTCACCAATGTTGATGTTAAACAGTACTCTTCTCCGGATGACTTAGAGACTTTCTACGTCAAACTCACCGACTTGTTGGACTCCTCTGGTTTCACTCTCATCTTGAATGTCCGAGAAACATCCTTGGACTTGTACCTCTTTTACTTGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTGGTAAAGAAAAGAAATGGGGTGAAATTGTGTCTGCTCTTAAACTGGAAGGAAACAATGCAAAATTATGTGCTCAACTTGAAAAGCTCTATGCTAATCTTCTTTACAAATTTGAGAAATTTTACTTCTATAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGGTTCGGCTAAAAGGAAGCATAGCTCAACCTCAAGTTTATCCCAATTAATGGATGATGGAGATTATCAGACAGCGGCAAAGATATCCAACGACTACCCTATCAAAATGACAGCAATTCCTGAAGTGCAACTACAAACACCAACAAAGGACAAAGTAAAGAAGAAAAAGCGAGGTGTTCCAACGGGACGAAGTGGATATCAAATTTTCCTCATGCAAGAATGTGCCCGGTTAAAAGCTTCTCGTCAGGATATAGATGGAAAAACAGTCGTGCGCATGGCTGTCGATGGATGGAATAACTTGTCGGACATTGATAAACAGCCATATTTGGAAGAAAGCAAGAAGATAAGGGAACAAATGAAGGAAGCAATGATGACTGAAAATAATAAACAGAAGAGCACTCAAGATCTTAAGAAGGATGAAAAGAAGGCTAATCTGTGCTGTGGTGATCACTACAGTGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGCAGTGGACATGGCTTCTAAAATGACAGAAAAAACATCGAAGGATCCCTTCTTCCCGTTTGATTTGGATGCTTATCAGTCCGTAGATTTGCTAACTGGGATAGCGACTGGAGAACCCAAATAA 1017 0.411 MEGKEEAVKTLVPSQLTNVDVKQYSSPDDLETFYVKLTDLLDSSGFTLILNVRETSLDLYLFYLEVTKRGGYHQVGKEKKWGEIVSALKLEGNNAKLCAQLEKLYANLLYKFEKFYFYRFPASQTATGSTKGSAKRKHSSTSSLSQLMDDGDYQTAAKISNDYPIKMTAIPEVQLQTPTKDKVKKKKRGVPTGRSGYQIFLMQECARLKASRQDIDGKTVVRMAVDGWNNLSDIDKQPYLEESKKIREQMKEAMMTENNKQKSTQDLKKDEKKANLCCGDHYSVTLQPQANNPLVNNAAVDMASKMTEKTSKDPFFPFDLDAYQSVDLLTGIATGEPK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi344g00029 338 ProSiteProfiles ARID domain profile. 27 117 IPR001606 GO:0003677
Vivi344g00029 338 SUPERFAMILY HMG-box 176 254 IPR036910 -
Vivi344g00029 338 Gene3D - 14 137 IPR036431 GO:0003677
Vivi344g00029 338 SMART bright_3 28 118 IPR001606 GO:0003677
Vivi344g00029 338 Pfam ARID/BRIGHT DNA binding domain 31 113 IPR001606 GO:0003677
Vivi344g00029 338 SMART ARID_2 24 113 - -
Vivi344g00029 338 SUPERFAMILY ARID-like 24 118 IPR036431 GO:0003677
Vivi344g00029 338 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 190 258 IPR009071 -
Vivi344g00029 338 MobiDBLite consensus disorder prediction 125 147 - -
Vivi344g00029 338 CDD HMG-box_SF 194 249 - -
Vivi344g00029 338 Coils Coil 240 260 - -
Vivi344g00029 338 Gene3D High mobility group box domain 174 259 IPR036910 -
Vivi344g00029 338 Pfam HMG-box domain 194 257 IPR009071 -
Vivi344g00029 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 180 275 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi344g00029 33 263 ARID Transcription Factor Family AT3G13350 24.436 5.06e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi344g00029 ARID 4.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi344g00029 - - mtr:120577736 357.451