Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi344g00028 ATGGAAGAAGACAAGGAAGAGGTGAAGACGATGGTGTCATCACAACCAGAACCAGATATCCAACTCACCAATGTTGATGTGAAACAGTACTCTTCTCCAAATGACTTAGAGATCTTCTACGTCAAACTCACTGACTTGTTGGACTCTTCTGGATACAATCTCATTATGAATGTCCGAAAAACATGCATAGACTTGTATCGGTTTTACTCGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTCGTAAGGAAAAGAAATGGGGTGAAATTGTTTCAGCACTAAAACTGGAAGGAAACAATGCAAGGTTATGTACTCAGGTTCAAAAGCTCTACGGAAAGCTTCTCTACAAATTTGAGAAACTTTACTTCTACAGGTTCCCTGCGTCTCAAACTGCAACAGGCAGCACCAAAGCTAAAAGGAAGCAGGAATCAGCATCAAGTTTATCCCAATTAATGGATGATGGAGATTATCCGACAGCGGCAGAGATATCCAAGGATTGCCCTATCAATGTGACAGCAATACCTGAAGTGCTCCTACAGACACCATCTAAGGACAAAGAAAAGAAGAAAAAGCGAGGCTGTCCAACGGGACGAAGTGGTTATCAAATTTTCCTCAAGCAGGAATGTGCGCGATTAAAAGCTTCTGGTCAGGACATAGATGGCAAGGATATCCTGCGCGTGGCGGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAAAAGAAGGAAGCAATGATGACTGAAAGTAATAAACAGAAGAGCACTCTAGATCTTAACAAGGATGAAAAGAAGGCTAATCTGTGTTGTGGTGACTACTACTGTGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTGAACAATGCAGCAGTGGATTTGGCTTATAAAATGACAGAAAAAACATCCAAGGATCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCGGTAGATTTGCTAACCGGGTTAGCAATCGGAGAACCAAAATAA 1029 0.4169 MEEDKEEVKTMVSSQPEPDIQLTNVDVKQYSSPNDLEIFYVKLTDLLDSSGYNLIMNVRKTCIDLYRFYSEVTKRGGYHQVRKEKKWGEIVSALKLEGNNARLCTQVQKLYGKLLYKFEKLYFYRFPASQTATGSTKAKRKQESASSLSQLMDDGDYPTAAEISKDCPINVTAIPEVLLQTPSKDKEKKKKRGCPTGRSGYQIFLKQECARLKASGQDIDGKDILRVAVEEWNKLSDIDKQPYVEESKKMKEQKKEAMMTESNKQKSTLDLNKDEKKANLCCGDYYCVTLQPQANNPLVNNAAVDLAYKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi344g00028 342 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 194 262 IPR009071 -
Vivi344g00028 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 147 277 - -
Vivi344g00028 342 SMART ARID_2 30 119 - -
Vivi344g00028 342 Pfam ARID/BRIGHT DNA binding domain 38 119 IPR001606 GO:0003677
Vivi344g00028 342 SUPERFAMILY ARID-like 29 123 IPR036431 GO:0003677
Vivi344g00028 342 Gene3D High mobility group box domain 180 276 IPR036910 -
Vivi344g00028 342 SMART hmgende2 195 263 IPR009071 -
Vivi344g00028 342 ProSiteProfiles ARID domain profile. 33 123 IPR001606 GO:0003677
Vivi344g00028 342 SUPERFAMILY HMG-box 180 258 IPR036910 -
Vivi344g00028 342 Gene3D - 18 144 IPR036431 GO:0003677
Vivi344g00028 342 CDD HMG-box_SF 198 253 - -
Vivi344g00028 342 Pfam HMG-box domain 198 260 IPR009071 -
Vivi344g00028 342 SMART bright_3 34 124 IPR001606 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi344g00028 37 249 ARID Transcription Factor Family AT1G55650 24.686 6.26e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi344g00028 ARID 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi344g00028 - - mtr:120577736 349.747