Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi344g00021 ATGTTGAGTGGTGGATCAGTGGGTGTAGAGAATGGATCAAGAGGAGGTACTAATTCTTTTGATCTTTCAAGAAATTCTTCAGCTCAGTATGATTTCTCAAGAAACAATGATCTGTTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCTGAGAAAGACCTGGGTAATGAGTTTTTTAAACAGAAGAAATTTAAGGAAGCTATTGATTGCTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCGCATGCAAATAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACGGAGGCCTTAAATCTTGACGATCGCTACATAAAAGCATACTCGCGGCGAGCAACGGCTAGAAAAGAACTTGGGAAAAATAAAGAATCCATGGAGGATGCTGAGTTTGCCATGAGGTTGGAACCTAACAATCATGAAGTCAAGAAACAGTATGCTGATGCCAAATCGCTTTACGAGAAAGAAATTCTACATAAAACATCTAAAGCACTAAAAAACACTATGCAAAAAATGGGAAAGTCTGAGGCAAAAGTTAATGGAAGCAGCAGCATCCACTCTGTTTCACATGGTACTCAAAAGTCAGGTCTAGCTGAAGCTCATCATCAAACCAAGGGTAGTGAGGGGAAAATTCCTGCTAAAGAATCACTCTTAATGGAGGAGATCAGTACTAAGGCTACAAAATCTGGAAGCAAGACTCAAGGACAAGTAGGCAATGGTTCTAGGGAAGGCCGTGGCGCAACCAACAGCTTGGACCAGAGAAATCACAAAACTAGAAAGCCGGAAATTAAAGCATCTGTTGAGCAGCTTGCTTCTCGGGCTGCTTCTCTAGCCATGGCTGAAGCTGCAAAAAATATAACACCGCCAACTACAGCTTATCAGTTTGAAGTCTCTTGGAGAGGGTTTTTAGGTGATCGTGCTTTGCAGGCTTGTCTATTAAAGGCATTGTCTCCCCAAGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTTGTTGAGATCATCAAGTGTGCTGCATCTTTTTTCGCTGAAGACATGGATCTAGTTGTCAGTTATATGAACAATTTAACCAAGGTACCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAGCAGATAAGGATGACTTGCGCAAGATCTGGAATGAAGTGTTCTGTGGTGAAGCAACTCCGACGGAGTATGCAGAGATTCTGGATAGCCTCCGATCAAAGTTCTACCTTGGCTAG 1281 0.4215 MLSGGSVGVENGSRGGTNSFDLSRNSSAQYDFSRNNDLLSRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAHANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNHEVKKQYADAKSLYEKEILHKTSKALKNTMQKMGKSEAKVNGSSSIHSVSHGTQKSGLAEAHHQTKGSEGKIPAKESLLMEEISTKATKSGSKTQGQVGNGSREGRGATNSLDQRNHKTRKPEIKASVEQLASRAASLAMAEAAKNITPPTTAYQFEVSWRGFLGDRALQACLLKALSPQELPKIFKNALSSTLLVEIIKCAASFFAEDMDLVVSYMNNLTKVPRFDVIVMCLPSADKDDLRKIWNEVFCGEATPTEYAEILDSLRSKFYLG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi344g00021 426 Gene3D Tetratricopeptide repeat domain 42 152 IPR011990 GO:0005515
Vivi344g00021 426 Pfam Potential Monad-binding region of RPAP3 303 392 IPR025986 -
Vivi344g00021 426 SUPERFAMILY TPR-like 50 166 IPR011990 GO:0005515
Vivi344g00021 426 MobiDBLite consensus disorder prediction 237 263 - -
Vivi344g00021 426 Pfam Coatomer epsilon subunit 82 169 - -
Vivi344g00021 426 MobiDBLite consensus disorder prediction 10 24 - -
Vivi344g00021 426 MobiDBLite consensus disorder prediction 183 215 - -
Vivi344g00021 426 ProSiteProfiles TPR repeat profile. 54 87 IPR019734 GO:0005515
Vivi344g00021 426 MobiDBLite consensus disorder prediction 1 24 - -
Vivi344g00021 426 PANTHER OS05G0129900 PROTEIN 24 425 - -
Vivi344g00021 426 MobiDBLite consensus disorder prediction 264 278 - -
Vivi344g00021 426 SMART tpr_5 88 120 IPR019734 GO:0005515
Vivi344g00021 426 SMART tpr_5 121 154 IPR019734 GO:0005515
Vivi344g00021 426 SMART tpr_5 54 87 IPR019734 GO:0005515
Vivi344g00021 426 MobiDBLite consensus disorder prediction 183 278 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi344g00021 58 124 U-box Gene Family AT3G07370 39.706 1.89e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi344g00021 K23002 - gmx:100784528 597.43