Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi344g00020 ATGTTGAAATTCACAAAAGGTTCATCTTCTCAGAGTGGTGGATCAGTGGGTGTAGAGAATGGATCAAGAGGAGGTACTAATTCTTTTGATCTTTCAAGAAATTCTTCAGCTCAGTATGATTTCTCAAGAAACAATGATCTGTTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCTGAGAAAGACCTGGGTAATGAGTTTTTTAAACAGAAGAAATTTAAGGAAGCTATTGATTGCTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCGCATGCAAATAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACGGAGGCCTTAAATCTTGACGATCGCTACATAAAAGCATACTCGCGGCGAGCAACGGCTAGAAAAGAACTTGGGAAAAATAAAGAATCCATGGAGGATGCTGAGTTTGCCATGAGGTTGGAACCTAACAATCATGAAGTCAAGAAACAGTATGCTGATGCCAAATCGCTTTACGAGAAAGAAATTCTACATAAAACATCTAAAGCACTAAAAAACACTATGCAAAAAATGGGAAAGTCTGAGGCAAAAGTTAATGGAAGCAGCAGCATCCACTCTGTTTCACATGGTACTCAAAAGTCAGGTCTAGCTGAAGCTCATCATCAAACCAAGGGTAGTGAGGGGAAAATTCCTGCTAAAGAATCACTCTTAATGGAGGAGATCAGTACTAAGGCTACAAAATCTGGAAGCAAGACTCAAGGACAAGTAGGCAATGGTTCTAGGGAAGGCCGTGGCGCAACCAACAGCTTGGACCAGAGAAATCACAAAACTAGAAAGCCGGAAATTAAAGCATCTGTTGAGCAGCTTGCTTCTCGGGCTGCTTCTCTAGCCATGGCTGAAGCTGCAAAAAATATAACACCGCCAACTACAGCTTATCAGTTTGAAGTCTCTTGGAGAGGGTTTTTAGGTGATCGTGCTTTGCAGGCTTGTCTATTAAAGGCATTGTCTCCCCAAGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTTGTTGAGATCATCAAGTGTGCTGCATCTTTTTTCGCTGAAGACATGGATCTAGTTGTCAGTTATATGAACAATTTAACCAAGGTACCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAGCAGATAAGGATGACTTGCGCAAGATCTGGAATGAAGTGTTCTGTGGTGAAGCAACTCCGACGGAGTATGCAGAGATTCTGGATAGCCTCCGATCAAAGTTCTACCTTGGCTAG 1308 0.4197 MLKFTKGSSSQSGGSVGVENGSRGGTNSFDLSRNSSAQYDFSRNNDLLSRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAHANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNHEVKKQYADAKSLYEKEILHKTSKALKNTMQKMGKSEAKVNGSSSIHSVSHGTQKSGLAEAHHQTKGSEGKIPAKESLLMEEISTKATKSGSKTQGQVGNGSREGRGATNSLDQRNHKTRKPEIKASVEQLASRAASLAMAEAAKNITPPTTAYQFEVSWRGFLGDRALQACLLKALSPQELPKIFKNALSSTLLVEIIKCAASFFAEDMDLVVSYMNNLTKVPRFDVIVMCLPSADKDDLRKIWNEVFCGEATPTEYAEILDSLRSKFYLG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi344g00020 435 MobiDBLite consensus disorder prediction 246 272 - -
Vivi344g00020 435 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Vivi344g00020 435 MobiDBLite consensus disorder prediction 1 31 - -
Vivi344g00020 435 MobiDBLite consensus disorder prediction 192 288 - -
Vivi344g00020 435 MobiDBLite consensus disorder prediction 192 224 - -
Vivi344g00020 435 SUPERFAMILY TPR-like 59 175 IPR011990 GO:0005515
Vivi344g00020 435 PANTHER OS05G0129900 PROTEIN 21 434 - -
Vivi344g00020 435 Pfam Potential Monad-binding region of RPAP3 312 401 IPR025986 -
Vivi344g00020 435 SMART tpr_5 130 163 IPR019734 GO:0005515
Vivi344g00020 435 SMART tpr_5 97 129 IPR019734 GO:0005515
Vivi344g00020 435 SMART tpr_5 63 96 IPR019734 GO:0005515
Vivi344g00020 435 MobiDBLite consensus disorder prediction 273 288 - -
Vivi344g00020 435 Gene3D Tetratricopeptide repeat domain 51 161 IPR011990 GO:0005515
Vivi344g00020 435 Pfam Coatomer epsilon subunit 91 178 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi344g00020 67 133 U-box Gene Family AT3G07370 39.706 2.00e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi344g00020 K23002 - gmx:100784528 595.504