Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi344g00019 ATGGATTTCCAGGGTTTCTTAAACGACTTGCAGGATTGGGAACTTTCCACAAAGGATAATAAAGCGGCAAAAGCCAAATCACAAAAGGAAAATAAATTCACAAAAGGTTCATCTTCTCAGAGTGGTGGATCAGTGGGTGTAGAGAATGGATCAAGAGGAGGTACTAATTCTTTTGATCTTTCAAGAAATTCTTCAGCTCAGTATGATTTCTCAAGAAACAATGATCTGTTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCTGAGAAAGACCTGGGTAATGAGTTTTTTAAACAGAAGAAATTTAAGGAAGCTATTGATTGCTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCGCATGCAAATAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACGGAGGCCTTAAATCTTGACGATCGCTACATAAAAGCATACTCGCGGCGAGCAACGGCTAGAAAAGAACTTGGGAAAAATAAAGAATCCATGGAGGATGCTGAGTTTGCCATGAGGTTGGAACCTAACAATCATGAAGTCAAGAAACAGTATGCTGATGCCAAATCGCTTTACGAGAAAGAAATTCTACATAAAACATCTAAAGCACTAAAAAACACTATGCAAAAAATGGGAAAGTCTGAGGCAAAAGTTAATGGAAGCAGCAGCATCCACTCTGTTTCACATGGTACTCAAAAGTCAGGTCTAGCTGAAGCTCATCATCAAACCAAGGGTAGTGAGGGGAAAATTCCTGCTAAAGAATCACTCTTAATGGAGGAGATCAGTACTAAGGCTACAAAATCTGGAAGCAAGACTCAAGGACAAGTAGGCAATGGTTCTAGGGAAGGCCGTGGCGCAACCAACAGCTTGGACCAGAGAAATCACAAAACTAGAAAGCCGGAAATTAAAGCATCTGTTGAGCAGCTTGCTTCTCGGGCTGCTTCTCTAGCCATGGCTGAAGCTGCAAAAAATATAACACCGCCAACTACAGCTTATCAGTTTGAAGTCTCTTGGAGAGGGTTTTTAGGTGATCGTGCTTTGCAGGCTTGTCTATTAAAGGCATTGTCTCCCCAAGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTTGTTGAGATCATCAAGTGTGCTGCATCTTTTTTCGCTGAAGACATGGATCTAGTTGTCAGTTATATGAACAATTTAACCAAGGTACCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAGCAGATAAGGATGACTTGCGCAAGATCTGGAATGAAGTGTTCTGTGGTGAAGCAACTCCGACGGAGTATGCAGAGATTCTGGATAGCCTCCGATCAAAGTTCTACCTTGGCTAG 1395 0.4179 MDFQGFLNDLQDWELSTKDNKAAKAKSQKENKFTKGSSSQSGGSVGVENGSRGGTNSFDLSRNSSAQYDFSRNNDLLSRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAHANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNHEVKKQYADAKSLYEKEILHKTSKALKNTMQKMGKSEAKVNGSSSIHSVSHGTQKSGLAEAHHQTKGSEGKIPAKESLLMEEISTKATKSGSKTQGQVGNGSREGRGATNSLDQRNHKTRKPEIKASVEQLASRAASLAMAEAAKNITPPTTAYQFEVSWRGFLGDRALQACLLKALSPQELPKIFKNALSSTLLVEIIKCAASFFAEDMDLVVSYMNNLTKVPRFDVIVMCLPSADKDDLRKIWNEVFCGEATPTEYAEILDSLRSKFYLG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi344g00019 464 Pfam Coatomer epsilon subunit 120 207 - -
Vivi344g00019 464 SMART tpr_5 126 158 IPR019734 GO:0005515
Vivi344g00019 464 SMART tpr_5 159 192 IPR019734 GO:0005515
Vivi344g00019 464 SMART tpr_5 92 125 IPR019734 GO:0005515
Vivi344g00019 464 MobiDBLite consensus disorder prediction 32 60 - -
Vivi344g00019 464 MobiDBLite consensus disorder prediction 221 316 - -
Vivi344g00019 464 ProSiteProfiles TPR repeat profile. 92 125 IPR019734 GO:0005515
Vivi344g00019 464 Pfam Potential Monad-binding region of RPAP3 341 430 IPR025986 -
Vivi344g00019 464 SUPERFAMILY TPR-like 88 204 IPR011990 GO:0005515
Vivi344g00019 464 PANTHER OS05G0129900 PROTEIN 1 463 - -
Vivi344g00019 464 MobiDBLite consensus disorder prediction 302 316 - -
Vivi344g00019 464 MobiDBLite consensus disorder prediction 275 301 - -
Vivi344g00019 464 Gene3D Tetratricopeptide repeat domain 80 190 IPR011990 GO:0005515
Vivi344g00019 464 MobiDBLite consensus disorder prediction 221 253 - -
Vivi344g00019 464 MobiDBLite consensus disorder prediction 18 60 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi344g00019 96 162 U-box Gene Family AT3G07370 39.706 2.47e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi344g00019 K23002 - gmx:100784528 630.172