Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi344g00018 ATGGATTTCCAGGGTTTCTTAAACGACTTGCAGGATTGGGAACTTTCCACAAAGGATAATAAAGCGGCAAAAGCCAAATCACAAAAGGAAAATAGTGGTGGATCAGTGGGTGTAGAGAATGGATCAAGAGGAGGTACTAATTCTTTTGATCTTTCAAGAAATTCTTCAGCTCAGTATGATTTCTCAAGAAACAATGATCTGTTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCTGAGAAAGACCTGGGTAATGAGTTTTTTAAACAGAAGAAATTTAAGGAAGCTATTGATTGCTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCGCATGCAAATAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACGGAGGCCTTAAATCTTGACGATCGCTACATAAAAGCATACTCGCGGCGAGCAACGGCTAGAAAAGAACTTGGGAAAAATAAAGAATCCATGGAGGATGCTGAGTTTGCCATGAGGTTGGAACCTAACAATCATGAAGTCAAGAAACAGTATGCTGATGCCAAATCGCTTTACGAGAAAGAAATTCTACATAAAACATCTAAAGCACTAAAAAACACTATGCAAAAAATGGGAAAGTCTGAGGCAAAAGTTAATGGAAGCAGCAGCATCCACTCTGTTTCACATGGTACTCAAAAGTCAGGTCTAGCTGAAGCTCATCATCAAACCAAGGGTAGTGAGGGGAAAATTCCTGCTAAAGAATCACTCTTAATGGAGGAGATCAGTACTAAGGCTACAAAATCTGGAAGCAAGACTCAAGGACAAGTAGGCAATGGTTCTAGGGAAGGCCGTGGCGCAACCAACAGCTTGGACCAGAGAAATCACAAAACTAGAAAGCCGGAAATTAAAGCATCTGTTGAGCAGCTTGCTTCTCGGGCTGCTTCTCTAGCCATGGCTGAAGCTGCAAAAAATATAACACCGCCAACTACAGCTTATCAGTTTGAAGTCTCTTGGAGAGGGTTTTTAGGTGATCGTGCTTTGCAGGCTTGTCTATTAAAGGCATTGTCTCCCCAAGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTTGTTGAGATCATCAAGTGTGCTGCATCTTTTTTCGCTGAAGACATGGATCTAGTTGTCAGTTATATGAACAATTTAACCAAGGTACCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAGCAGATAAGGATGACTTGCGCAAGATCTGGAATGAAGTGTTCTGTGGTGAAGCAACTCCGACGGAGTATGCAGAGATTCTGGATAGCCTCCGATCAAAGTTCTACCTTGGCTAG 1368 0.4196 MDFQGFLNDLQDWELSTKDNKAAKAKSQKENSGGSVGVENGSRGGTNSFDLSRNSSAQYDFSRNNDLLSRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAHANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNHEVKKQYADAKSLYEKEILHKTSKALKNTMQKMGKSEAKVNGSSSIHSVSHGTQKSGLAEAHHQTKGSEGKIPAKESLLMEEISTKATKSGSKTQGQVGNGSREGRGATNSLDQRNHKTRKPEIKASVEQLASRAASLAMAEAAKNITPPTTAYQFEVSWRGFLGDRALQACLLKALSPQELPKIFKNALSSTLLVEIIKCAASFFAEDMDLVVSYMNNLTKVPRFDVIVMCLPSADKDDLRKIWNEVFCGEATPTEYAEILDSLRSKFYLG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi344g00018 455 Gene3D Tetratricopeptide repeat domain 71 181 IPR011990 GO:0005515
Vivi344g00018 455 MobiDBLite consensus disorder prediction 212 244 - -
Vivi344g00018 455 MobiDBLite consensus disorder prediction 266 292 - -
Vivi344g00018 455 MobiDBLite consensus disorder prediction 27 51 - -
Vivi344g00018 455 Pfam Potential Monad-binding region of RPAP3 332 421 IPR025986 -
Vivi344g00018 455 SMART tpr_5 83 116 IPR019734 GO:0005515
Vivi344g00018 455 SMART tpr_5 150 183 IPR019734 GO:0005515
Vivi344g00018 455 SMART tpr_5 117 149 IPR019734 GO:0005515
Vivi344g00018 455 MobiDBLite consensus disorder prediction 293 307 - -
Vivi344g00018 455 MobiDBLite consensus disorder prediction 212 307 - -
Vivi344g00018 455 Pfam Coatomer epsilon subunit 111 198 - -
Vivi344g00018 455 MobiDBLite consensus disorder prediction 18 51 - -
Vivi344g00018 455 SUPERFAMILY TPR-like 79 195 IPR011990 GO:0005515
Vivi344g00018 455 PANTHER OS05G0129900 PROTEIN 1 454 - -
Vivi344g00018 455 ProSiteProfiles TPR repeat profile. 83 116 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi344g00018 87 153 U-box Gene Family AT3G07370 39.706 2.33e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi344g00018 K23002 - gmx:100784528 637.491