Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi344g00014 ATGGAAGATATTTACAATATCAACAAGATGAATCTCCCTTTTTCATCTTCTCCACAGAACCTTAACGTTAACGTTTCTTCTTATACTCCTCCAACCACCACTACTTCAGAATTGCATCTAGGACTCGTCCGCGCCGTTACCAATAATAACTACCACCATCAACCGGATCTAATCGGGTCGGATATATCGGATCGGATTATCAAGAACCAGATCGCAACTCATCCTCTTTATCCAAATCTACTATCTGCTTTCATAGAATGCCAAAAGGTTGGAGCACCGACTGAACTTGCATCTCTTCTCGAAGAAATAGGCCGTGAAAGCCACCACACCAATGTTCTCCGTCAGATAGGAGATGATCCTGACCTTGATCAATTCATGGAATCATACTGTGAAGTTCTTCATAGATACAAAGAGGAGTTATCGAAACATTTAAACGAAGCGAGTTTGTTTTTGTGTGATATCGAATCACAACTAAGCCAACTTTGCAAAGGGACATTAACAATCTCATCTGATAATAACAACAACCGTTCAGATGAAGCTGCAGGGACATCAGAGGATGAAATGAGCTGTGCAAAGGTTGAAGTAGTTGAAGGTGTTCATGAACATTGTGGCACATCATGTCCAGGTGACAAAGAGCTTAAACAAATGCTGCTTCGTAAATATGGAGGTTATCTTAGTAACTTGAGAAAGGAGTTTCTTAAGAAAAGGAAAAAGGGTAAACTACCCAAGGATGCAAGAATGGCATTGCTGGATTGGTGGAACGTCCACTATAGATGGCCTTATCCCACGGAGGAGGAGAAAATGCAGCTATCTGAAATGACCGGACTTGATATAAAGCAGATAAATAACTGGTTCATCAATCAGAGGAAAAGACACTGGAAACCATCTGAAGATATGAGATTTGCGATTATTGAGGGTGTAACTAGCACCGGCGGAGAAGGACCTCTATAA 951 0.4111 MEDIYNINKMNLPFSSSPQNLNVNVSSYTPPTTTTSELHLGLVRAVTNNNYHHQPDLIGSDISDRIIKNQIATHPLYPNLLSAFIECQKVGAPTELASLLEEIGRESHHTNVLRQIGDDPDLDQFMESYCEVLHRYKEELSKHLNEASLFLCDIESQLSQLCKGTLTISSDNNNNRSDEAAGTSEDEMSCAKVEVVEGVHEHCGTSCPGDKELKQMLLRKYGGYLSNLRKEFLKKRKKGKLPKDARMALLDWWNVHYRWPYPTEEEKMQLSEMTGLDIKQINNWFINQRKRHWKPSEDMRFAIIEGVTSTGGEGPL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi344g00014 316 Gene3D - 230 302 - -
Vivi344g00014 316 SMART KNOX1_2 65 109 IPR005540 GO:0003677|GO:0005634
Vivi344g00014 316 Pfam KNOX1 domain 67 108 IPR005540 GO:0003677|GO:0005634
Vivi344g00014 316 ProSiteProfiles 'Homeobox' domain profile. 232 295 IPR001356 GO:0003677
Vivi344g00014 316 ProSiteProfiles ELK domain profile. 212 232 IPR005539 GO:0003677
Vivi344g00014 316 SUPERFAMILY Homeodomain-like 234 301 IPR009057 -
Vivi344g00014 316 CDD homeodomain 244 296 IPR001356 GO:0003677
Vivi344g00014 316 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 302 - -
Vivi344g00014 316 Pfam Homeobox KN domain 252 291 IPR008422 GO:0003677|GO:0006355
Vivi344g00014 316 SMART ELK_2 212 233 IPR005539 GO:0003677
Vivi344g00014 316 SMART KNOX2_2 112 163 IPR005541 GO:0003677|GO:0005634
Vivi344g00014 316 ProSitePatterns 'Homeobox' domain signature. 270 293 IPR017970 GO:0000981|GO:0006355
Vivi344g00014 316 Pfam KNOX2 domain 115 162 IPR005541 GO:0003677|GO:0005634
Vivi344g00014 316 SMART HOX_1 234 299 IPR001356 GO:0003677
Vivi344g00014 316 Pfam ELK domain 212 233 IPR005539 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi344g00014 35 310 Homeobox Transcription Factor Family AT1G23380 47.387 6.00e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi344g00014 KNOX2 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi344g00014 - - mtr:11406488 448.358