Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi341g00004 ATGGATTGTTTGGCTACAACATCTGTTCTTTCTAATCATTTTGCTCCATTTTCTACCATCAATACTAATTCGGCAGTCAGTTTCCATAGAATTTACAGAAGTTCAACCGAAGAAAAGTTATGTCTCTCTTTCTCTAGGGATAATTATACAGTTGGGAGGAATGCTGCAATGAAATCAAGCAGAGAAGTATCTTATTTGAAAACCCAACAACAACATGGAACTTGGGAAGAACCAGATATTGCTAGTGACAGTGAGAGTGATAGTGAAGAAGATGAGAGCCTTGGATTTGGAAGTGATGGGGAAGAGACAGAGACTTCACAATCTGCCGGTGTTAATATCACCGCTCAGGCCGAGTATGAGCGTATTAAGGAAGAGGTTGAACAGCTTTTGGAACCAGAAGAAAGAAAAATATTGCAACAAAATGTAACTCCTAACTTGGAAAAAATATCATCTGAAAAATGGAGCCCACTGCACTCTCTTGCGTTATCGCTGCAAATTTATAGCATGGACCAGCTTGTTGAAAATGGTTACGATATTGATTTCGTCAATAAGGAAGGTCTCACTGCACTTCACAAGGCAATTATAGGTAAAAAGGAAGCGGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCAAGGATAAGGATGGAGCTACTCCACTTCATTATGCAGTCCAAGTTGGTGCAAAGCAAACTGTGAAATTATTGATTAAATACGACGTCGATGTCAATGTTGCAGACAACGAAGGTTGGACTCCATTGCACGTTGCTATTCAAAGCCGGAATAGAGATATAGCGAAAATTTTGTTAGTCAATGGTGCAGATAGGATGATGAAAAATAAGGATGGAAAAACAGCGTTGGATCTAAGCTTATGTTATGGAAAAGACTTCATGTCGTATGACCTTGCTAGATTATTGAAGGTAGTTCCAGTCTACTGA 945 0.3926 MDCLATTSVLSNHFAPFSTINTNSAVSFHRIYRSSTEEKLCLSFSRDNYTVGRNAAMKSSREVSYLKTQQQHGTWEEPDIASDSESDSEEDESLGFGSDGEETETSQSAGVNITAQAEYERIKEEVEQLLEPEERKILQQNVTPNLEKISSEKWSPLHSLALSLQIYSMDQLVENGYDIDFVNKEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYDVDVNVADNEGWTPLHVAIQSRNRDIAKILLVNGADRMMKNKDGKTALDLSLCYGKDFMSYDLARLLKVVPVY 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi341g00004 314 Pfam Ankyrin repeats (3 copies) 200 280 IPR002110 GO:0005515
Vivi341g00004 314 SMART ANK_2a 251 280 IPR002110 GO:0005515
Vivi341g00004 314 SMART ANK_2a 152 181 IPR002110 GO:0005515
Vivi341g00004 314 SMART ANK_2a 185 214 IPR002110 GO:0005515
Vivi341g00004 314 SMART ANK_2a 218 247 IPR002110 GO:0005515
Vivi341g00004 314 ProSiteProfiles Ankyrin repeat region circular profile. 185 217 - -
Vivi341g00004 314 ProSiteProfiles Ankyrin repeat profile. 185 217 IPR002110 GO:0005515
Vivi341g00004 314 MobiDBLite consensus disorder prediction 80 98 - -
Vivi341g00004 314 ProSiteProfiles Ankyrin repeat profile. 251 283 IPR002110 GO:0005515
Vivi341g00004 314 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 65 308 - -
Vivi341g00004 314 ProSiteProfiles Ankyrin repeat region circular profile. 251 277 - -
Vivi341g00004 314 SUPERFAMILY Ankyrin repeat 143 296 IPR036770 -
Vivi341g00004 314 MobiDBLite consensus disorder prediction 65 112 - -
Vivi341g00004 314 Gene3D - 223 310 IPR036770 -
Vivi341g00004 314 Gene3D - 112 222 IPR036770 -
Vivi341g00004 314 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Vivi341g00004 314 ProSiteProfiles Ankyrin repeat region circular profile. 218 250 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi341g00004 169 292 Ion Channels AT2G25600 28.387 8.85e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi341g00004 - - lja:Lj0g3v0067589.2 408.297