Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi340g00010 ATGTCATCCTCCTCCTCCATTTCAAATTCACTCCCTTACCCACACTCCAACATCCACAAATTCCATACCTTCACTTCCAACCACTACAAACCCCAATCCCGTTTTCTCTTCTCCTTCCCCGTATCCAAAATCAACAGCGTCAGGAGCCTTAAAACCCGTTGCGCTTCAGATGATGCTTCTAGTTTCCATGGTGTCGAGTTCATTGTTTCCATTTTACCAGGAGGCGATTGGTGGGCATTACCGAAGCACCGGGAAGACCCCGCAGAACCGGCAGAGGCTAAGCTTGCTCTCCGACGAATGTTGGAGCTAGTTTCCGATGAGCGGTGGGTTGCAGTCGTGGCATTTGGGTCCCTTGTCATTGCTGCTCTTTCAGAAATCACCATGCCAAGTATTCTGGCAGCATCAATATTTTCGGCACAAAGTGGCAAGACTGCAGCATTCTCTAGGAATGCAATGTTTTTGGTTCTACTATGTTTCACTTCAGGGATATGCAGTGGTTTGCGAAGTGGCTGCTTCGGAATTTTGAATGTAACCTTGGTAAAGCGTCTCCGAGAAAACTTGTATACAGCCATTCTTTTTCAGGACATATCCTATTTTGATAAAGAAAAAGTTGGCACCTTGACAAGCAGGCTTGCAGCAGATTGTCAACAGCTTTCACATGTTATAGGAAACGATCTTCAGTTAATATTACGCAACTCTTTGCAGGGAACAGGAGCAATAATTAATTTACTGGTTTTATCTTGGCCTCTAGCATTATCTGCACTCATGATTTGTTCCGTGTTATCTGCAATTTTCCTGGTTTATGGCAGGTATCAAAGAAAAGCAGCAAAGTTAACCCAAGATTTCTCTGCTTGTGCTAATGATGTAGCTCAGGAAACACTTTCTTTAATAAGAACTGTTCGAGTGTATGGGACCAAAAACGAAGAATTTGAAAGGTACAACCACTGGCTACAGAAATTAGCATTTATTAGCAGTCGAGACAGCGTGGGTAATGGTTTGTGGAACCTGAGCTTTAACACCCTTTACCGTTCAACTCAGATATTTGCAGTTCTTTTAGGAGGAATGTCTGCTCTCAGCTGTTGTGTAACTGTTGAGCAACTTACAAAGTATGTATTATACTGTGAGTGGTTGATTTTTGCCACTTGGAGGGTGACAAACAGTTTATCATCATTAATGCAGTCCATTGGAGCATCTGAACAAATTTTCGAAATGATGAACCGATTGCCCTGTGACCAATTCTTGGTCCAAGGAATTAAGTTGCAGAGGCTAATGGGCCATATTCAGTTTGTTGATGTATCATTTCATTATCCTGCAAGGAGTATAATGCCTGTTCTAGAACACTTAAACTTCTCTGTAAAAGCAAATGAAGTCATTGCCATTGTTGGTCTGAGTGGCAGTGGAAAGAGCACGTTAATCAACCTTTTACTTCGCCTGTACGAGCCTTGTAGTGGTCAGGTATGTATTGATGGTTTCCCTCTCAAGGAGTTGGATATTAGATGGCTGAGGCAGAACATTGGATATGTTGCGCAGGAACCGCATATCTTTCATATGGACATAAAGTCGAACATAGAGTATGGTTGCCCTAATAACTTAAATGTAGAAGATATTATAAAGGCAGCAAAACTGGCTTATGCCCATGACTTTATTTCCTCTCTTCCTAATGGCTACGACACCGTTGTTGATGGCAATGCACTTAGTGGTGGACAAAAGCAGCGAATTGCCATTGCCAGGTCCATTATCAGAGACCCAGTTATTATGATTCTGGACGAACCAACCAGTGCCTTGGATTCTGAAAGTGAGCATTATATCAAGGAGGTGTTGTATACATTGAGAAATGAAAATAAATCAAGAACCATCATTATCATAGCACATAGGCTTTCTACTGTAAAAGCGGCTGACCGAATCATTGTTATGGATAATGGTCGAATTATTGAGATGGGTAACCATGAAGAGCTTCTGGTCAAAGATGGGCTCTATGCCAAGTTAAACAAAATTCAAGCTGATGTATTTTAA 2013 0.4183 MSSSSSISNSLPYPHSNIHKFHTFTSNHYKPQSRFLFSFPVSKINSVRSLKTRCASDDASSFHGVEFIVSILPGGDWWALPKHREDPAEPAEAKLALRRMLELVSDERWVAVVAFGSLVIAALSEITMPSILAASIFSAQSGKTAAFSRNAMFLVLLCFTSGICSGLRSGCFGILNVTLVKRLRENLYTAILFQDISYFDKEKVGTLTSRLAADCQQLSHVIGNDLQLILRNSLQGTGAIINLLVLSWPLALSALMICSVLSAIFLVYGRYQRKAAKLTQDFSACANDVAQETLSLIRTVRVYGTKNEEFERYNHWLQKLAFISSRDSVGNGLWNLSFNTLYRSTQIFAVLLGGMSALSCCVTVEQLTKYVLYCEWLIFATWRVTNSLSSLMQSIGASEQIFEMMNRLPCDQFLVQGIKLQRLMGHIQFVDVSFHYPARSIMPVLEHLNFSVKANEVIAIVGLSGSGKSTLINLLLRLYEPCSGQVCIDGFPLKELDIRWLRQNIGYVAQEPHIFHMDIKSNIEYGCPNNLNVEDIIKAAKLAYAHDFISSLPNGYDTVVDGNALSGGQKQRIAIARSIIRDPVIMILDEPTSALDSESEHYIKEVLYTLRNENKSRTIIIIAHRLSTVKAADRIIVMDNGRIIEMGNHEELLVKDGLYAKLNKIQADVF 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi340g00010 670 Gene3D - 417 669 IPR027417 -
Vivi340g00010 670 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 112 393 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi340g00010 670 SMART AAA_5 454 642 IPR003593 GO:0016887
Vivi340g00010 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 666 IPR027417 -
Vivi340g00010 670 FunFam Multidrug ABC transporter ATP-binding protein 419 669 - -
Vivi340g00010 670 ProSitePatterns ABC transporters family signature. 565 579 IPR017871 GO:0005524|GO:0016887
Vivi340g00010 670 PANTHER ABC TRANSPORTER B FAMILY 82 663 IPR039421 -
Vivi340g00010 670 SUPERFAMILY ABC transporter transmembrane region 98 409 IPR036640 GO:0005524|GO:0016020
Vivi340g00010 670 Gene3D ABC transporter type 1, transmembrane domain 94 410 IPR036640 GO:0005524|GO:0016020
Vivi340g00010 670 Pfam ABC transporter 445 593 IPR003439 GO:0005524
Vivi340g00010 670 Pfam ABC transporter transmembrane region 115 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi340g00010 670 CDD ABC_6TM_TAP 114 401 - -
Vivi340g00010 670 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 427 665 IPR003439 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi340g00010 182 666 Calmodulin-binding Proteins AT2G36910 33.786 5.83e-72 251