Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi33g00080 ATGTGCAAGTGCAACGGCTCGAACAGAAAACCCTCTCAAACTGGTTTGATTAGGGATCATGAATATGAAAGACAAGAAGAACTGCAGCATGAGACTTGTGATTTGCTTGAGCTTTCAGCCACAGATGATGTTATAGCTTTCAAAGAGGCTGTTGAAAAAGACAATCATGATGTCAATGAGGTAGGGTTGTGGTATGGAAGGAGGATTGGCTCAAAGGAAATGAGATATGAAGAGAGGACACCTCTCATGATTGCTTCCTTGTTTGGAAGCAAGGGTGTATTGTCTTATATTCTTGAAACTGGTCGTGTCAATGTTAACCAAGCGTGCGGATCGGATAGGGCTACTGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCTGAGGTTATCAAGCTTCTGCTTGATGCATCTGCAGATGTTAATTCTGTTGATGCGAACGGAAAGCGGTGCATTGACTTGATTGTCATGATGCCTAATAGTATCTCTGGTTCAAGGAAGAGGAAACTACAAGCAATACTAGAAGGTACTGATGACATTGATGTCGACGATGATTTCGTTAAGGAAGTAGGTTTCCAAATGGAGAAGCAGCAAGAAGATATCGGTGCACCTCGGATTGAGAAGAAAGATTATCCGATTGATCTATCGCTACCCGACATAAATAATGGAATATATAGTACGGATGAATTTAGGATGTATATATTCAAAGTGAAGACTTGTTCGAGGGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGCCGTGATCCGATGATATATCATTACACCTGTGTCCCTTGTCCGGAGTTTCGGAAGGGTTCATGCAGTAAAGGGGATGCTTGTGAATATGCGCATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGTAAGGATGAGACCGAATGCACACGAAGAGTCTGCTTTTTTGCACACAAACCCGAGGAGCTTCGCCCGTTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCCTATTCAAATTCACCTAGTGCTTCTTCCATGGATTATTTCACATTGAGCTCCCCGTCCAGTTCGACACAATCCATGTCGACACCGCCTTTGACTCCATCTGCAGTGTCACCTCCTGCAGGTGGAACCATGTGGCCGAGTCAGTCTCATGCTGCAGTTCCTACACTTCAGTTGCCGGGAAGCAGATTGAAAACTGCACTGAATGCTAGATATGATACTGAATTTCTCGAGCTCGAAAATCGCCTTATGCAGAAGCTAATGATTGAAGAGATGACAGGTCTTTCATTCCCTTCAAATAGGCTTGCAGGTGTGAATCCTGCTAACCTCGAAGACATTCTCGGTTCTCAGATACAATCTCCAACATCAACTCATGTGCATCCGAATGTGACTCAGCAACTTTGGGGATTTTCTTCTGACCTTACCAATTCAAAAAATGATGTCGTGGCGAAGCGGAGCCAGAGCTTTATCGAGCGCAGCAGCATGGAGAACTTTAGTTCCAAGCTTCCTTCTGCTACCTCGGTTACTATGGAGCCATATACTAACTTCTCCGGTTGGAGCTCCCCTGATGGAAAATTAGACTGGTCCATCCGTGGCGATGAACTGAATAAGATGAAAAAGTCTAATTCTTTCAGCTTTCGAAACCAACTTAGCAATTCAACAATGGTTGCGCAAAATGCTGATGATCAAGATGTATTATTAAGCCAGGAATCATGGGTTAATTCACTAGTGAAGGATGCACCAACAGCGAAATCGGATCAATATTGTGAAGTGTAA 1812 0.4382 MCKCNGSNRKPSQTGLIRDHEYERQEELQHETCDLLELSATDDVIAFKEAVEKDNHDVNEVGLWYGRRIGSKEMRYEERTPLMIASLFGSKGVLSYILETGRVNVNQACGSDRATALHCAVSGCSAASAEVIKLLLDASADVNSVDANGKRCIDLIVMMPNSISGSRKRKLQAILEGTDDIDVDDDFVKEVGFQMEKQQEDIGAPRIEKKDYPIDLSLPDINNGIYSTDEFRMYIFKVKTCSRAYSHDWTECPFVHPGENARRRDPMIYHYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDETECTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPSASSMDYFTLSSPSSSTQSMSTPPLTPSAVSPPAGGTMWPSQSHAAVPTLQLPGSRLKTALNARYDTEFLELENRLMQKLMIEEMTGLSFPSNRLAGVNPANLEDILGSQIQSPTSTHVHPNVTQQLWGFSSDLTNSKNDVVAKRSQSFIERSSMENFSSKLPSATSVTMEPYTNFSGWSSPDGKLDWSIRGDELNKMKKSNSFSFRNQLSNSTMVAQNADDQDVLLSQESWVNSLVKDAPTAKSDQYCEV 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi33g00080 603 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Vivi33g00080 603 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Vivi33g00080 603 SUPERFAMILY Ankyrin repeat 44 159 IPR036770 -
Vivi33g00080 603 Gene3D - 270 333 - -
Vivi33g00080 603 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Vivi33g00080 603 MobiDBLite consensus disorder prediction 362 394 - -
Vivi33g00080 603 MobiDBLite consensus disorder prediction 362 377 - -
Vivi33g00080 603 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Vivi33g00080 603 Gene3D - 28 181 IPR036770 -
Vivi33g00080 603 SMART ANK_2a 77 107 IPR002110 GO:0005515
Vivi33g00080 603 SMART ANK_2a 112 144 IPR002110 GO:0005515
Vivi33g00080 603 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Vivi33g00080 603 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Vivi33g00080 603 PANTHER UNKEMPT FAMILY MEMBER 37 592 IPR045234 -
Vivi33g00080 603 Pfam Ankyrin repeats (3 copies) 70 146 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi33g00080 27 557 C2H2 Transcription Factor Family AT5G12850 41.586 2.46e-139 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi33g00080 Ank_2 4.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi33g00080 - - psat:127084564 921.768