Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi33g00061 ATGATGCTGCAAGTTAAGCTAGTCTTCACAACGTTGGTGTGTTGGAACATAATAACTAGTTATAACTGTGTAGTTGGAGATTCACAAACAAGTATAGTACTAAACAGTGGTTGCAGCACATATAACGCATCAAATTTACATAGCTTCTACGCGAACATTAATGGAACATTTTCAGATTTGAGAAATGAAATTAGCAATGGCAGCAAACACTTTGCAACAGCACAAGAAGCAAGAGGAGATGTGATGACATATTCTCTCTTTCAATGCAGAAATTACCTCTCCAAAAAGGATTGTGTTGCTTGCTTCAATACTTCTTCTACTAAAATTCGTGACTGCTCAGCTTCCAATGGTGCAAAACTCATCTATGATGGGTGTTTCCTAAGTGAAAGGTTCTACGATCAAACAAATCAACCTGGAGGTGGTATATTATGTGGGAACAAGACTGCAAAGGAAGGTGCTTCTTTTGGAACAATTGGACTAAAAGTGCTAATGGATCTCCAATTAGCAACACCAAAAATTAAAGGCTTTTTTGCAGCTACTAAGACAGTAGTGAATCCTGGCAGTGGTAGCAATAGTTCAATTTATGCCATTGCACAGTGTGTTGAAACTGCCACAGAAAGTTCGTGTCTTGATTGCATGACCGTTGGATACAACAGCTTGCAAACTTGTCTTCCTAATACAGATGGTAGAGCATATGATGCAGGGTGTTTTATGAGATACTCAGATACACCCTTTTTTGCTGATAATCAAGCTATTGATATCACAACCTATTTAAATCAAGGTGGTTCAAGCAACAAATGGGCCATTATAGGTGGCGTTGTTGGCGGTGTAGGTCTTGTTGCGATCATTCTTGCAATTTTAGCTTGGCAACGATACAGAAAACCTAAGAGAGCTCCTAGAGGCAACATATTGGGAACAACCAAGTTGAAAGGTCCAATTAAATACAAGTATAATGATTTGAAAGCTGCAACAAAAAACTTCAGCGAAGAAAATAAACTGGGAGAAGGAGGGTTTAGTAAAGTATACAAGGGTACTCTAAAAAATGGAAATGTTGTGGCAGTCAAGAAACTGGTTTTGGGAAAATCCAGCAAGATAGACAATGATTTTGGAAGTGAAGTAAGGCTTATAATAAGCAATGTTGATCATAGGAATCTTGTTGGACTTCTTGGTTGTTGCAGTAAAAAACAAGAGAAAATCCTTGTTTATGAATACATGGCAAACAGTAGCCTGGACAAATTCTTATTTGGTGAAAAACAAGGCTCCCTCAATTGGAAACAAAGGTGTGATATAATTTTAGGCACAGCAAGAGGACTGGCCTACCTACATGAGGAATTCCACATTCCCATTATACATAGAGATATAAAGAGTAGCAACATCCTCCTTGATGATAATCTTCACCCCAAAATTGCTGATTTTGGATTGGCGCGGCTTCTGTCGGGGAATCGATCTCTAAGAACAGGAGTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATTCATGGTCAATTATCAGAAAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATCATAAGCGGTCAAAAGAGTACAAAAGTAAAGGAAGATGATGATGGTGATTACCTTCTTCAAAAGTCATGGAAACTGTATGAGAGAGGCAGGCAATTGGAGCTCGTGGACAAGACCTTAGACCCTAGTGACTATGATGGAGAAGAAGTGAAGAAAACGATAGAGATTGCTTTACTATGCACTCAAACATCAGCAGGAATGAGACCAACAATGTCTGAAGTAGTAGTCCTCCTCCAAACCAAGAGTTTAGTGGAGCACCTACAACCAACTATGCCTATGTTTATAGATACGAATCTTAAGTATAGTGAAGGATACTCAACCTCAACTGGTTCTTCTACATCTAATGCTACCGCTTCCTTTTCAATTTTATCAGCTCGATGA 1941 0.39 MMLQVKLVFTTLVCWNIITSYNCVVGDSQTSIVLNSGCSTYNASNLHSFYANINGTFSDLRNEISNGSKHFATAQEARGDVMTYSLFQCRNYLSKKDCVACFNTSSTKIRDCSASNGAKLIYDGCFLSERFYDQTNQPGGGILCGNKTAKEGASFGTIGLKVLMDLQLATPKIKGFFAATKTVVNPGSGSNSSIYAIAQCVETATESSCLDCMTVGYNSLQTCLPNTDGRAYDAGCFMRYSDTPFFADNQAIDITTYLNQGGSSNKWAIIGGVVGGVGLVAIILAILAWQRYRKPKRAPRGNILGTTKLKGPIKYKYNDLKAATKNFSEENKLGEGGFSKVYKGTLKNGNVVAVKKLVLGKSSKIDNDFGSEVRLIISNVDHRNLVGLLGCCSKKQEKILVYEYMANSSLDKFLFGEKQGSLNWKQRCDIILGTARGLAYLHEEFHIPIIHRDIKSSNILLDDNLHPKIADFGLARLLSGNRSLRTGVAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTKVKEDDDGDYLLQKSWKLYERGRQLELVDKTLDPSDYDGEEVKKTIEIALLCTQTSAGMRPTMSEVVVLLQTKSLVEHLQPTMPMFIDTNLKYSEGYSTSTGSSTSNATASFSILSAR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi33g00061 646 Gene3D - 30 133 IPR038408 -
Vivi33g00061 646 Gene3D - 141 245 IPR038408 -
Vivi33g00061 646 FunFam Cysteine-rich receptor-like protein kinase 2 405 606 - -
Vivi33g00061 646 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Vivi33g00061 646 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 85 629 - -
Vivi33g00061 646 Gene3D Phosphorylase Kinase; domain 1 294 404 - -
Vivi33g00061 646 Pfam Protein kinase domain 328 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi33g00061 646 SUPERFAMILY Protein kinase-like (PK-like) 308 598 IPR011009 -
Vivi33g00061 646 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Vivi33g00061 646 CDD STKc_IRAK 333 599 - -
Vivi33g00061 646 FunFam Cysteine-rich receptor-like protein kinase 2 293 404 - -
Vivi33g00061 646 Gene3D Transferase(Phosphotransferase) domain 1 405 610 - -
Vivi33g00061 646 ProSiteProfiles Gnk2-homologous domain profile. 137 245 IPR002902 -
Vivi33g00061 646 SMART serkin_6 327 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi33g00061 646 FunFam Cysteine-rich receptor-like protein kinase 2 139 245 - -
Vivi33g00061 646 ProSiteProfiles Protein kinase domain profile. 327 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi33g00061 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Vivi33g00061 646 Pfam Salt stress response/antifungal 38 127 IPR002902 -
Vivi33g00061 646 Pfam Salt stress response/antifungal 150 242 IPR002902 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi33g00061 17 646 Receptor kinase-like Gene Family AT1G70520 35.139 7.64e-118 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi33g00061 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi33g00061 - - gmx:100305452 849.736