Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi33g00040 ATGTCACCTGGAGTATTAACCTCTATTTACATTATTACCCTTCAACTAATTATTCTATTCACTTCACCAGCTACCTCTCATTCTCATTACTCTTCTCCTTCGCCACCAGCCGCACCCTTCTCGGAATCCCCTAACAAACGTCCCTTTCCTCCCGCCTCCGAATGGCTCTCCGCCCACGCCACATACTCCTCCACCTCCGATGACACCAGAGACGCAGTCGACGGCGCATGCGGCTACGGCGACGCTCTAAGAGACCGTTACGGCATCACCGCAGCTTCTCTTAGCGAAACTCTCTTTCAACACGGCCAGATCTGTGGCGCATGTTATGAGCTTCGCTGTTTTGAGGAGGATGTTCCCTTCGACCGGCGGTGGTGCGTCTCCGGCAGGTCTATTGTTGTCACCGCTACTAATTTCTGTGCTCCGAACTACGGTTTTGACGCGGAGAGTAACGGTGGACATTGTAACCCTCCTAAGCAGCATTTCGTGATTCCGGTTGAAGCTTTCGAGAAGATTGCGATTTGGAAAGGGGGTAGCATGCCCGTGGAGTATCGCAGGACAAAGTGCACAAGGGAAGGGAGAATGCGGTTTACAATTACAGGTTCTGGCATATTCAATTCAGTGCTGATAAGTAATGTGGCTGGCATAGGTGACATTGTTGGTGTAAAAGTTAAGGGTTCAAAAACTGGTTGGATTCCTATGGGTAGGAATTGGGGTCAAAATTGGCATGTAAATGCATTGCTACAAAATCAACCTCTTTCATTTGAGGTCACTAGTAGTGATGGTGTAACCGTTACATCTTACAATGTAGCTCCTAAGAATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGACTCTTAG 864 0.4815 MSPGVLTSIYIITLQLIILFTSPATSHSHYSSPSPPAAPFSESPNKRPFPPASEWLSAHATYSSTSDDTRDAVDGACGYGDALRDRYGITAASLSETLFQHGQICGACYELRCFEEDVPFDRRWCVSGRSIVVTATNFCAPNYGFDAESNGGHCNPPKQHFVIPVEAFEKIAIWKGGSMPVEYRRTKCTREGRMRFTITGSGIFNSVLISNVAGIGDIVGVKVKGSKTGWIPMGRNWGQNWHVNALLQNQPLSFEVTSSDGVTVTSYNVAPKNWTFGQTFEGKQFDS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi33g00040 287 CDD DPBB_EXPA_N 54 188 - -
Vivi33g00040 287 Pfam Expansin C-terminal domain 194 271 IPR007117 -
Vivi33g00040 287 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Vivi33g00040 287 PRINTS Expansin/Lol pI family signature 176 192 IPR007118 GO:0005576
Vivi33g00040 287 PRINTS Expansin/Lol pI family signature 54 69 IPR007118 GO:0005576
Vivi33g00040 287 PRINTS Expansin/Lol pI family signature 95 113 IPR007118 GO:0005576
Vivi33g00040 287 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Vivi33g00040 287 PRINTS Expansin/Lol pI family signature 268 282 IPR007118 GO:0005576
Vivi33g00040 287 PRINTS Expansin signature 168 181 IPR002963 GO:0009664
Vivi33g00040 287 PRINTS Expansin signature 268 284 IPR002963 GO:0009664
Vivi33g00040 287 PRINTS Expansin signature 239 260 IPR002963 GO:0009664
Vivi33g00040 287 PRINTS Expansin signature 151 168 IPR002963 GO:0009664
Vivi33g00040 287 PRINTS Expansin signature 192 204 IPR002963 GO:0009664
Vivi33g00040 287 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Vivi33g00040 287 PRINTS Expansin signature 86 100 IPR002963 GO:0009664
Vivi33g00040 287 SUPERFAMILY Barwin-like endoglucanases 52 211 IPR036908 -
Vivi33g00040 287 Gene3D - 43 189 IPR036908 -
Vivi33g00040 287 Pfam Lytic transglycolase 92 183 IPR009009 -
Vivi33g00040 287 Gene3D - 193 285 IPR036749 -
Vivi33g00040 287 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 203 282 IPR007117 -
Vivi33g00040 287 PANTHER EXPANSIN-A15 28 285 IPR002963 GO:0009664
Vivi33g00040 287 SMART dpbb_1 90 183 IPR007112 -
Vivi33g00040 287 SUPERFAMILY PHL pollen allergen 191 282 IPR036749 -
Vivi33g00040 287 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 74 193 IPR007112 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi33g00040 54 287 Expansin Gene Family AT3G03220 67.949 1.96e-119 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi33g00040 - - vvo:131622085 564.303