Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi33g00039 | ATGACAATGGAAGAAGAACAAGTATCCTTAGCTGGAACACTCCCATTTGATAGAGCTGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCTTATTTACTCAAATGTGGTAGTAGAGGAAAACCGAAGCTATGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATCTGGTGTTCAGGCCAGCAGGAGAAGCATTTGCGATTGAGTGGTGTTACCAAAATTGTGCAAGGACAAGGAAATAATATAAGGACTCAGAAACAAAATGAAACCGAAAAAGAATGTCATTCATTTTCGCTGATCTATGCGAATGGTGAACACTCTCTTGATCTGATATGCAAGGACAAAACACAAGCTGCTACTTGGTTTGTTGGATTGAAAGCTGTGATTTCAAGGTGCCAGCAACCAAAAGCTTTTACTAGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTTAGTAGTCCAGCCGGAATTTTACGTCGAAAGAAAAATCTTGGTCTTCTAGATGACACCTCTCAATTTACTCAGGTACATAGTGTATGTGCAAGTCCGAGTTTGTCACTTTCGGAAAGGTGTTTTTCTGATGGCCTGTCATATGCTTCTGATACCTTCTATTCATCGGCATCATCCCATTCGAGCATTCACGGTATAACAGATAATTCAGTCCCGAGTTCGCCATATATTAATCCAGATGTTCATAGCCATGTTAAAACATCTCGTTTCGAAAAGGAGCACAAAAAGGATTTGTCATCATATAGATCTATCTTGCCTCCTACCTCCCCACATGTAGGAAACAACAGTAGCAATGTGTTGAAGGATGTAATGATATGGGGTGGAGGAATTGGTTGCCTTGTAGGGATTGTGAATGAAAGGTTTGTCCAAAATAGTAATTATTCTTTGGTGCCGAAGTTACTCGAATCCACAGCAATGTTAGATGTACAAAATGTAGCTTTAGGAGGAAACCACGCTGCCATAGTGACAAAACAAGGTGAAGTATTCTGTTGGGGTCAAGGGAAGTGGGGACGGTTAGGGCAGAGAATTGATATGGACACTAGCTCCCCGAAAATAGTTGATTCTCTTAGTGATATTCGTGTAAAAAACGTTGCTTGCGGCGAGTATCATACATGTGCTTTGACGGATTCTGGCGAAGTATACGCGTGGGGGAACGATGTTTCTTTTTCGGGTTTGGTTGATGAAGGAAGGATTAGAAGTCAGTGGTTAACACATAAACTTTCTTTACCTGTAGAGGGTATTAGTATTTCCAGCGTTGCTTGTGGCGAATGGCATACCGCTATGGTCTCTAGCTGCGGTCGATTGTTTACATATGGAGACGGTACATTTGGAGTTCTCGGACATGGGAATTATCAGAGCACTTCTAGTCCGAAAGAGGTTCAGTCTCTTAAGGGTCTATGTGTGAGATCTGTTGCTTGTGGAACATGGCATACGGCTGCGATCATCGAAGTCATTGCCGACCGTTTTAAGTACAATACTTCTACCGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGGGAGACTCGGTCATTCTGATAATGGAAACAAGCTTGTACCGACATGTGTTTCGCAGCTTGTTGACTACGATTTTGTTCAAGTATCTTGTGGAAGGACGTTGACGTTAGCACTTACTAGCATGGGGAAAGTTTTTGCAATGGGAAGTGTGAAATTCGGACAATTGGGAAATCCACATGTTAAGGATAGAGCAGTTATGGTTGAAGGAATGCTTAAACAAGAGTATGTTAAAAAGATATCTTGTGGTTCATATCATGCTGCTGTTTTGACATCTTCCGGGAGTGTGTACACATGGGGAAAAGGCGAAAACGGACAACTTGGGCTAGGTGATACCGAAAACCGTTGCACACCTTCTTTTGTTGAGGCGTTAAGAGACAGGCAGGTAGATACAATAACTTGTGGTCCAAGTTTCACAGTTGCAATATGTTTGCATAAACCTATTTCAATGAGTGACCAATCGAGTTGTAGTGGTTGTAGGTTACCATTCGGCTTCACAAGGAAGAAACACAACTGTTATAACTGCGGCCTTTTGTTCTGTGGCAATTGTAGTAGCAAAAAAGTTATGAATGCGTCTCTAGCCCCGGATAAAAGCAAGGCCTTTCGCGTTTGTGATTCGTGCTTTGATAGAAAGCAAGGAAGTAGTAGCACACATTCAATTATGGACTCATCAAAGTCTAGAAATTATAACTATCAGCATTTACAAAAGCATAAGAACAAGAGTTGTGATCTCACTGAAGATAGAGGCGAGACAAATGTGACAAACGGTCCTTTATTATCGCTTCATCAATCGTGCTACCGGAAAAACATGCCTAGTGGAAGGAAGGTTTGGAAAAACCAACAAGAAAGCCAACAGAAATTAGAAGATTGTTCTTCTAAGTTAGGTAATGTGCCACAATGCGGACAAGTTCCATGTTCAGCACAATTTAGAAGCAATTGTACCGAAAATTCAGCTATGCGTGATTCTTCAACCAAAAATAGAATATCTACTGTTTCACCACTCAATGTAGATTCCACAGATACAACAAAGTCTGATAAGTTACTCATAGAAGAAGTTCAGAGACTGAGAGCTGAGGCTAGGAGACTTGAAAAGCAATGTGAATTCCAAAACCATGAAATACAAGAGTGTCAACATAAAATCGAGGAGAGTTGGTCCGTGGCGAAAGAGGAAGCGGCTAAATGCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCACACATTATCAGGAAAAGATAATCATGGAGTAGAACAAAAGGCTGTGCTACAAGAATGTCTTCCGAATTTGGCACCTATACATACCGATACGAATACTCCAAGAAATACCAACATGGATAGTCTATCGAATTCGCCTATAGTATTTTCCAGTGCATTAAGATCCAAATTCGGTAGAAGCATGTTCCTCAAAAATGACAAATCGACGGACAACAATACTAACCTCCTTACACCAGAATCTCAACAAGACACTGCAGATGGCTTGAAGGCTGAATGGGTAGAACAGTATGAGAACGGTGTTTACATCACGTTGACAACCTCGCCGAGTGGAGAAAAAGGACTTAAGCGCGTGAGATTTAGCCGGAAGCGATTTGCGCAGAAGGAAGCTGAAAGATGGTGGGAAGAGAATCAAGCAAAAGTGTATCATAAGTATGGAATTGAAGGATGTCAAAAGTAA | 3207 | 0.4128 | MTMEEEQVSLAGTLPFDRAVEQAIVSIKKGAYLLKCGSRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGQGNNIRTQKQNETEKECHSFSLIYANGEHSLDLICKDKTQAATWFVGLKAVISRCQQPKAFTSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPSLSLSERCFSDGLSYASDTFYSSASSHSSIHGITDNSVPSSPYINPDVHSHVKTSRFEKEHKKDLSSYRSILPPTSPHVGNNSSNVLKDVMIWGGGIGCLVGIVNERFVQNSNYSLVPKLLESTAMLDVQNVALGGNHAAIVTKQGEVFCWGQGKWGRLGQRIDMDTSSPKIVDSLSDIRVKNVACGEYHTCALTDSGEVYAWGNDVSFSGLVDEGRIRSQWLTHKLSLPVEGISISSVACGEWHTAMVSSCGRLFTYGDGTFGVLGHGNYQSTSSPKEVQSLKGLCVRSVACGTWHTAAIIEVIADRFKYNTSTGKLFTWGDGDEGRLGHSDNGNKLVPTCVSQLVDYDFVQVSCGRTLTLALTSMGKVFAMGSVKFGQLGNPHVKDRAVMVEGMLKQEYVKKISCGSYHAAVLTSSGSVYTWGKGENGQLGLGDTENRCTPSFVEALRDRQVDTITCGPSFTVAICLHKPISMSDQSSCSGCRLPFGFTRKKHNCYNCGLLFCGNCSSKKVMNASLAPDKSKAFRVCDSCFDRKQGSSSTHSIMDSSKSRNYNYQHLQKHKNKSCDLTEDRGETNVTNGPLLSLHQSCYRKNMPSGRKVWKNQQESQQKLEDCSSKLGNVPQCGQVPCSAQFRSNCTENSAMRDSSTKNRISTVSPLNVDSTDTTKSDKLLIEEVQRLRAEARRLEKQCEFQNHEIQECQHKIEESWSVAKEEAAKCKAAKEVIKALALRLHTLSGKDNHGVEQKAVLQECLPNLAPIHTDTNTPRNTNMDSLSNSPIVFSSALRSKFGRSMFLKNDKSTDNNTNLLTPESQQDTADGLKAEWVEQYENGVYITLTTSPSGEKGLKRVRFSRKRFAQKEAERWWEENQAKVYHKYGIEGCQK | 1068 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi33g00039 | 1068 | Gene3D | - | 495 | 661 | IPR009091 | - | |
| Vivi33g00039 | 1068 | CDD | FYVE_like_SF | 664 | 717 | - | - | |
| Vivi33g00039 | 1068 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 659 | 721 | IPR017455 | - | |
| Vivi33g00039 | 1068 | SUPERFAMILY | PH domain-like | 19 | 130 | - | - | |
| Vivi33g00039 | 1068 | Pfam | FYVE zinc finger | 660 | 719 | IPR000306 | GO:0046872 | |
| Vivi33g00039 | 1068 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 437 | 488 | IPR000408 | - | |
| Vivi33g00039 | 1068 | Coils | Coil | 854 | 888 | - | - | |
| Vivi33g00039 | 1068 | MobiDBLite | consensus disorder prediction | 826 | 849 | - | - | |
| Vivi33g00039 | 1068 | Gene3D | - | 236 | 394 | IPR009091 | - | |
| Vivi33g00039 | 1068 | Gene3D | - | 395 | 492 | IPR009091 | - | |
| Vivi33g00039 | 1068 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 64 | 918 | - | - | |
| Vivi33g00039 | 1068 | CDD | PH_PLC_plant-like | 18 | 131 | - | - | |
| Vivi33g00039 | 1068 | Pfam | Pleckstrin homology domain | 21 | 128 | IPR001849 | - | |
| Vivi33g00039 | 1068 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 662 | 720 | IPR013083 | - | |
| Vivi33g00039 | 1068 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 382 | 436 | IPR000408 | - | |
| Vivi33g00039 | 1068 | SMART | fyve_4 | 653 | 722 | IPR000306 | GO:0046872 | |
| Vivi33g00039 | 1068 | SUPERFAMILY | FYVE/PHD zinc finger | 658 | 731 | IPR011011 | - | |
| Vivi33g00039 | 1068 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 500 | 548 | IPR000408 | - | |
| Vivi33g00039 | 1068 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 437 | 485 | IPR000408 | - | |
| Vivi33g00039 | 1068 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 602 | 651 | IPR000408 | - | |
| Vivi33g00039 | 1068 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 330 | 378 | IPR000408 | - | |
| Vivi33g00039 | 1068 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1006 | 1061 | IPR013591 | - | |
| Vivi33g00039 | 1068 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 603 | 654 | IPR000408 | - | |
| Vivi33g00039 | 1068 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 552 | 602 | IPR000408 | - | |
| Vivi33g00039 | 1068 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 423 | 433 | IPR000408 | - | |
| Vivi33g00039 | 1068 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 589 | 599 | IPR000408 | - | |
| Vivi33g00039 | 1068 | ProSiteProfiles | BRX domain profile. | 1007 | 1062 | IPR013591 | - | |
| Vivi33g00039 | 1068 | PRINTS | Chromosome condensation regulator RCC1 signature | 423 | 439 | IPR000408 | - | |
| Vivi33g00039 | 1068 | PRINTS | Chromosome condensation regulator RCC1 signature | 541 | 559 | IPR000408 | - | |
| Vivi33g00039 | 1068 | PRINTS | Chromosome condensation regulator RCC1 signature | 598 | 619 | IPR000408 | - | |
| Vivi33g00039 | 1068 | PRINTS | Chromosome condensation regulator RCC1 signature | 439 | 453 | IPR000408 | - | |
| Vivi33g00039 | 1068 | PRINTS | Chromosome condensation regulator RCC1 signature | 382 | 398 | IPR000408 | - | |
| Vivi33g00039 | 1068 | PRINTS | Chromosome condensation regulator RCC1 signature | 313 | 326 | IPR000408 | - | |
| Vivi33g00039 | 1068 | PRINTS | Chromosome condensation regulator RCC1 signature | 332 | 348 | IPR000408 | - | |
| Vivi33g00039 | 1068 | Gene3D | - | 19 | 137 | IPR011993 | - | |
| Vivi33g00039 | 1068 | SUPERFAMILY | RCC1/BLIP-II | 273 | 655 | IPR009091 | - | |
| Vivi33g00039 | 1068 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 475 | 485 | IPR000408 | - | |
| Vivi33g00039 | 1068 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 272 | 329 | IPR000408 | - | |
| Vivi33g00039 | 1068 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 500 | 551 | IPR000408 | - | |
| Vivi33g00039 | 1068 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 330 | 381 | IPR000408 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi33g00039 | 1003 | 1064 | Major Intrinsic Protein MIP | AT1G31880 | 46.774 | 7.57e-11 | 63.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi33g00039 | - | - | gmx:100797223 | 1621.68 |