Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi33g00016 ATGATGGATGAGCGGCGGCATTCTGTTGATATACCGATTTCTAAGACTCTTGTGGCATTGAGGAGAGTGAGGTCATTGAGGGATCCATCAACTAATTCTATGATCAAACGTTCTTCTTTGATTGACAACTTACATTGGGATAACCGTTCCGGAAATGGGATTTCTCTGCTGTTTCCGGAGGATGTTCATGTTTGTGATTCTGATGATAGTGTTGCTTTTAGAACAAGGAGTTCAGGTTTTAAGGAGCAAAGAGAGCTGGATGCTAGTGGTTCAGAATTGCATCACCATGGTCTGTTGAATTCACGGATGTATCAACCAAGTGTTTATGGAAATAAATCGCCTAATGAAAGCTGTGGTAGTAACCATGGTGGTAAAGGATTGGGTATGAATGATTTCGAGGATGGGGAATTAAGCTTTAGAACAACGGGCAGGTCGTCTAAACTAGGGAGAATAGATCGCTTTAAGTCGGCCAAAAAGCCCCCGCGCAAGAGTCAAGTCAAACCATCTGATGTAATGGGAGATACTACTAGCCATTTGAGCAGTCCGTGCCTTTCTGTTCGTGATAGTTTATTGCGCCATGGTTCCTCGGGGTATATGGATCAAGATTTTGATGTTCAAGATAATAGTGATAATGGATGTGGATTAAGTTATTGTTGGTCAAAGTCACCAAGGTTTATAGAGTCGGATATTTGTTGTGAGACAGAAGATCGTCCGTTGATATTGCATTGCGTGGAGGACATGGAACTTCATGAACGTAGAAGCGCGAGACATAGTGGTGGTGAAGTTAGTCCAAATTTGGAAACACCTAGAATGTTTTCAATGAAATTCAGGCCTAAATTATTTGGTGATTTGGTGGGACAAGATGTGGTTGTTAGGTCTCTTTTGGGTGCAATCTCGAGTGGAAGGATAACATCATTTTATCTATTCCATGGTCCACGCGGTACTGGCAAGACATCTGCCTCAAGAATATTTGCTTCTGCGCTGAACTGCGTTGCTGTTGGGGAGCAAAGACCATGTGGTCTGTGTAGAGAATGCATTCTATTCTTTTCAGGAAGAAGTAAAGATGTTAAAGTAGTGGATTCTATGAAAATCAATCAAACAGACCAGGTTAAATCTCTTGTTAAGAATGCGTGTTCTCCTCCAGTTTCGTCAAGTTTTAAGATTTTCATTATCGATGAGTGCCAGTTATTGAACGGGGAGACATGGGCTTGCCTTTCGAATAACCTAGAGAACATTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCAAAGTGCAGTTTCCCGGGCTCAAAGGTATTACTTTCCAAAGGTTAAAGACGCTGATATTACACGCCGATTAGAAAGAATATGTGCAGAAGAAGGTCTTGATTACGAACAAGCTGCTTTGGACCTAATTGCTGCAAAATCCTCTGGTTCTGTTAGAGATGCCGAAATTATGCTTGATCAGCTAAGTTTGCTTGGAAAAAAGATTAAAGTTTCCTTAGTTTATGAGCTTACTGGGATTGTTTCGGATGATGAATTGTTTGATTTGCTAGATTTGGCCCTATCACCTGACACTTCAAATACAGTTATAAGAGCTCGTGAGCTGATGAGATCGAGAATAGATCCTTCGCAACTTGTGTCCCAGTTAGCAAATCTCATAATGGACATCCTTGCGGGGAAATGTGATTATGAAGCCAGAAGTAGATTTTCTAGTAGATACACATCGGAAGCAGACCTTCAGAAACTAAGCCATGCGTTGAGAATACTCTCCGATGCCGAGAAGCAATTAAGAATTTCAAAAAATCAAACAACGTGGTTCACTGTAGCTCTTCTACAGTTAAGCTCTATTGATTATCCTTCCACAGATGTAAATGGTGCCAAGTTGCTTCTGAGAGGGCAGAGCTTGGAACACCTTTCTACAGGTGGTTGCGAAAACAAGTCATTTAGATTAGTGGCGCACGAGGATCACGAAGGAACACTGGATTCCATATGGTATAGAGCTACCGGGATATGCCAATCTAGTCAGCTCAAAACTTTTCTCAGAAAGAAGGGAAAGTTGTCTTCACTTCATGTTGATCAATCTACTTCTTGTCTTGCTATTGCAGAGTTGGAGTTTGGCAATCGCCGCCATGTATCCAAGGCCGAGAAGTCATGGAAATTGATAGCAAGTTCCTTGCAACGCATATTGGGCTGTAACATTGAGTTGAGGATCACTCATGTACCTCAAACTTCTAATTCACCAAAGAGGTTATCTTTCAACATCTTTAGTTGTGCGCGCGAAATACAAGAAAGTGAAATAGACTATGCTGATCACACTTCTCAAAAATCCATGATGAAGAATACAACACTATCATCTTCCTCTGATTGTGGATCCCAGGAGCCACCACTGAAGTCTTATGAAGGAATGGATGTCATAACGACTCTGAGGAGTTGCGAAGGGAACTTGCTCAGCTCGAGAGAAAGATTTTTGAATAGGTCTTCTTCTCTAGAAACTATGAGAGCATCATGTTCTAGAGTTGATTCTTACAATGAAGAGGGACACAGCAGTGCACATTTAGTTACATATGTTCCCAATTCAGACAATCAGTCTAACTGTTTTCCTCAAGCTCTCTGGCTTCAAAAGAAGTCCCCAGCTTCACATTCATCCAAATTGTCATTTCAGGGTATCTAA 2673 0.413 MMDERRHSVDIPISKTLVALRRVRSLRDPSTNSMIKRSSLIDNLHWDNRSGNGISLLFPEDVHVCDSDDSVAFRTRSSGFKEQRELDASGSELHHHGLLNSRMYQPSVYGNKSPNESCGSNHGGKGLGMNDFEDGELSFRTTGRSSKLGRIDRFKSAKKPPRKSQVKPSDVMGDTTSHLSSPCLSVRDSLLRHGSSGYMDQDFDVQDNSDNGCGLSYCWSKSPRFIESDICCETEDRPLILHCVEDMELHERRSARHSGGEVSPNLETPRMFSMKFRPKLFGDLVGQDVVVRSLLGAISSGRITSFYLFHGPRGTGKTSASRIFASALNCVAVGEQRPCGLCRECILFFSGRSKDVKVVDSMKINQTDQVKSLVKNACSPPVSSSFKIFIIDECQLLNGETWACLSNNLENISQHVVFVMITPDLDKLPQSAVSRAQRYYFPKVKDADITRRLERICAEEGLDYEQAALDLIAAKSSGSVRDAEIMLDQLSLLGKKIKVSLVYELTGIVSDDELFDLLDLALSPDTSNTVIRARELMRSRIDPSQLVSQLANLIMDILAGKCDYEARSRFSSRYTSEADLQKLSHALRILSDAEKQLRISKNQTTWFTVALLQLSSIDYPSTDVNGAKLLLRGQSLEHLSTGGCENKSFRLVAHEDHEGTLDSIWYRATGICQSSQLKTFLRKKGKLSSLHVDQSTSCLAIAELEFGNRRHVSKAEKSWKLIASSLQRILGCNIELRITHVPQTSNSPKRLSFNIFSCAREIQESEIDYADHTSQKSMMKNTTLSSSSDCGSQEPPLKSYEGMDVITTLRSCEGNLLSSRERFLNRSSSLETMRASCSRVDSYNEEGHSSAHLVTYVPNSDNQSNCFPQALWLQKKSPASHSSKLSFQGI 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi33g00016 890 CDD HLD_clamp_pol_III_gamma_tau 444 507 IPR045085 -
Vivi33g00016 890 Gene3D - 508 618 - -
Vivi33g00016 890 MobiDBLite consensus disorder prediction 150 180 - -
Vivi33g00016 890 Gene3D - 445 507 - -
Vivi33g00016 890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 493 IPR027417 -
Vivi33g00016 890 NCBIfam DNA polymerase III subunit gamma/tau 272 614 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vivi33g00016 890 MobiDBLite consensus disorder prediction 150 165 - -
Vivi33g00016 890 FunFam DNA polymerase III subunit gamma/tau 445 507 - -
Vivi33g00016 890 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 274 700 - -
Vivi33g00016 890 SUPERFAMILY post-AAA+ oligomerization domain-like 508 615 IPR008921 GO:0003677|GO:0006260
Vivi33g00016 890 Gene3D - 265 442 IPR027417 -
Vivi33g00016 890 Pfam DNA polymerase III, delta subunit 287 444 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi33g00016 262 556 Core DNA Replication Machinery Family AT1G21690 24.749 7.08e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi33g00016 - - tpra:123897029 1409.82