Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi33g00009 ATGGCAGTTTCTGAATTAACCGCCGACGTGTTCCCATGGCTGAAATCCATGCCACTGGCCCCGGAGTACCGACCAACCGCCGCGGAATTCGAAGATCCGATCGGTTACATTTTCAAGATCGAGAAAGAAGCTTCTCAGTACGGAATCTGCAAAATCGTTCCACCGTTTCCGCCGTCACCCAAGAAAACCGCCATAGCTAACCTCAACAGGTCACTGGTTAATTCCACATTCACCACACGTCAGCAGCAGATCGGGTTCTGTCCACGGAAGTCCCGACCCGTCAAACGACCCGTCTGGCAGAGTGGGGACCACTACACTTTCGCTGAGTTCGAAGCGAAAGCGAAATGGTTCGAGAAGAGTTACATGAAGAAGCATAACAAGAAGGGTGGTGTTAGTGGTAGTGGCAATGCTCTTGAAACGGAGACGATGTTTTGGAAGGCTACTGTTGATAAACCGTTTTCAGTTGAGTATGCGAACGACATGCCTGGCTCTGCGTTTTCGGCGCAATGTAGGCATGCTGGTGAGGCTGCTTCGGTGGCTCATAGTGCTTGGAATATGAGAGGGGTTTCGAGGGCGAAAGGGTCTTTGTTGAGGTTTATGAAGGAGGAGATTCCCGGGGTTACTTCGCCTATGGTTTATCTTGCTATGCTATTCAGCTGGTTTGCGTGGCATGTTGAGGATCATGATCTTCATAGCTTGAATTATCTTCATATGGGCGCTTCTAAGACGTGGTATGGTGTTCCTAGGGATGCTGCTGTTGCTTTTGAGGATGTTGTTAGGGTTCATGGCTATGGTGGAGAGATTAACCCTCTTGTTACATTTTCTATTCTGGGTGAGAAAACCACAGTGATGTCACCAGAAGTGCTTGTCAGTGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAGTTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCAAACATAGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGAAGGGCTTCAATAAATTACCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGGAGGAATCAGTGCTGAACCACGGAGTTCTCGTCTTAAAGATAAAAAGAAGGGTGAAGGAGATTCTGTAGTCAAAGAACTATTTGTCCAAGACGTGTTACGAAACAATGATCTACTTCATGTACTCGGAAAAGAATCTTCTGTAGTACTTCTTCCTCGCAGTTCAGTTGACATTTCTATTTGCTCAAAATTACGCGTCGGATGCCAGCAGCAAAAAGTGAACCCTGAATTTTCCATTAATGTATGCAATTCCAAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGAAATTGTGGAATCCTGCAAGAAAAAAAATTCCATTCTGTGAAAGACAAGTTTACTCTGTTGTGTGAAGGGAAGGGTATTTCCTCTTTTGATGCAAACGGTAGCACATCCCCTTCAAGTTCTAAGCAACTTCAAACAGACAACAACTGTGAATCGAATCAAGAAGACGGGTTGTCAGATCAGAGACTGTTTTCGTGTGTCACATGTGGACTATTAAACTTTTCCTGTGTTGCTATTGTACGTCCTAGCGAACTAGCAGCTAGATATCTTATCTCTGCTGGTTGTAGCTCCTTTAATGATTGGGTTGTTGGTTCTGGGGTACCTAACAATAAAACTACTCTTGCTCACGAAGATGCAAATAATCCGGAGCCAAATATGCATACAGGGTGGACGAAGACTAATACCCAAGTAGAGGCTGTAAATACTGAAGGAGGAAATGACAATACAGCTCTTGCATTATTGGCTTCGGCATATGCAAATTCTTCCGACTCTGAGGAAGATGCAATTGACGATCATGAATTGAATGCGATAAACTCTACATCTGAAAGTTTCCCTTCTAATGTTCAGGCTTCCCATGCTAATCCCATGACTAGACATGATAAAGATGATATTCTTTCAGAGAGCACCAGTTACCAAGCACATATATCTGAGGTTAATTTGAATCGGCCTCAAGAACAATCATTTGCGGAACAGAATTATAAAGTTACTTCAGAGGCTGCATTTGAAAATACAAGGCCAGTGCCTTATTCCATTTCATATAGTTCCCAAGATGCTAATAATGCTGAAAAGTCTTTGTCGGCCGAAGCCATGGTTGCTGTCAATCATAAAAATGCTTTATTGGTACCACAATGTGACGAAGACTCAACTAGAATGCATGTATTCTGTCTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGGCCAATAGGTGGAGCCCATATAGTGCTCTTATGTCATCCAGATTATCCCAAGATAGAAGCTGAGGCAAAGTTGTGGGCAGAAGATTTGGGGATTGATTATTCATGGAAGAATATTGCCTACAGGCATGGCACCAAGGAAGATGAGGAGAGGATCCAAGCTGCTGTGGATAGTGAAGAAGCAATTCCCGGGAATGGGGACTGGGCTGTAAAGCTAGGAATAAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGCAAGCAGATGCCTTACAATCCTGTTATATATTATGCATTTGGTCGTAGCTCTCCAGCAAGCTCGCCCATAGAACCAAAGGTCTATCAGAGAAGGACTGACAGGCAGAAAAAGGTAGTTGCTGGCAAATGGTGTGGTAAAGTTTGGATGTCTAATCAGGTCCATGCCCTTTTAGCAAAAATGGATTCTGAAGATGTTGAGGATGAGGAAATTTTACATAGATTGATATCACCTGACGTGAAAATTGAAAGATCGGGAAGTACCCCCAAAACTGAAACTGCTAGTACTAAATCCGGTAGGAAAAGGAAAATGTTCTTAAACAAAGGACGGACCAGGAAAGGAAGTTTTGTTGAAAATGAAATGGTTTTGGAAAATTCCACTGAAGATAAATCAAATAAATCAAATCCTCAGGAAAGGAGGATTCTTAGAAGCAAGCAAGCTAAGGGTGTTGAGAAAGATGGTGCAGCTTTGCACAGGGATTTTTCTCCATATCGTCGTAGAAAACCAATGAGCAAACAAAAAAATTGCACTGAAAGTGATGTAGTTTCTGATGATCAATTTATTGACAATGATGTGGTTTCAGATGATGCAGTGGACTATGATTCTGATTGTCATCAGATGGGAGAACTTAGAAGCAGTCAAGTTGAAGATACAGAGAGAGACTCAATTTCAGAGGATTCTTTGGATGTCGGTTCTCTTCAGTTGCAAATAGAGACTTCTAGAAGCAAGCATGCCAACGTCATTAGTGAAGACGATGCAATTTCTGATGACCAAATGGAGAATGGTTGTCAGAAGCAACGCAAGAGAATTCCTAAAAGCAGGAAAGGAAATTCCCTTGCTGAAAAAGATTCAGTGACATCTGATGACCAACTGGAGCTGAACATCCAGAAACAGCGCAGGGGTAATTCTAGAAGTAGGAAACTCAAATACCTCCATGAAGATGATATTGTATCGGATAACCAAACAAATATCTATTGTCGCAAGTACCAAAGAAGAACAGTTAAAGTCAGGCAAGCCAAATGTGTAGCAAGGGAAGATGTAATGTCTGACGATCAATTGGATGATCCCTATCAAAAGCAGAAACCAAGAATTTCTAGAAGGAAAAACAAAGGCATTAATAGAGAATTTAAAAATGAAGTGTCCGATGACCAACAAGATGGCCACTTTCAGAAGCAGCAGCAAAAAATTCCGAAGAGCAGGAGGCACACCATACAGACTGATGAAGAAGTTATCGATGACTCGGCTGATGACAATGCCTGTCTGCTGCATAGAACTTCTAAAAGGAAGAAAGCTAAATTCAAGGATGAAGATGATATGAGTTTAGATAATGAAATAGAAGATGATTCTCTTCCGCAGCACAAAACTCTTCCAAGTAAACAATCAAAACCAAAGACACTTAAACAGATGAAACAATCCAAATCTTTCTCGATGAAAAACCAGACACCTCGGCCAGTGAAACGAGGGGCTCAGATGCTGATGAAATCAAAGGTTGCTCAGCAAGTAAAGCAGCCTTCTCATTTGCGAAATAAACAATCTGGTAACTCCAGAGAGCCTAGTTTAGATTTGGAAGAGGAGGATGTAGGTGGACCTAGCACACGCCTTAGAAAGAGACTCCCAAAAGCTCAGGAGTCTGAAGTAAAATCAAAAGACAAACAAACCAAAAGGAAAAGAACAAAGGATGCTACAGCAGCTACTCATGTTTCAGCTCGCAATGCCAAAACAGAGAACGAGGAAGCAGAATATCAGTGTGACATCGAGGGATGCACCATGAGTTTTGAGTCAAAACAGGAGCTGCTGCAGCATAAGAAAAATATCTGTCCAGTAAAAGGTTGCGGGAAAAAGTTCTTTTCACACAAATATCTGGTGCAGCACCGGCGAGTTCATGAAGATGACCGCCCGCTCAAGTGTCCCTGGAAGGGGTGCAAGATGTCTTTCAAGTGGGCATGGGCTCGAACTGAGCATATCCGAGTCCACACCGGTGCACGTCCTTATATATGTGCGGAGCCAGGTTGTGCACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGGAAGACTGGTCATTTAACAAAGAAGAGTCGTCAATAA 4698 0.4272 MAVSELTADVFPWLKSMPLAPEYRPTAAEFEDPIGYIFKIEKEASQYGICKIVPPFPPSPKKTAIANLNRSLVNSTFTTRQQQIGFCPRKSRPVKRPVWQSGDHYTFAEFEAKAKWFEKSYMKKHNKKGGVSGSGNALETETMFWKATVDKPFSVEYANDMPGSAFSAQCRHAGEAASVAHSAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLKDKKKGEGDSVVKELFVQDVLRNNDLLHVLGKESSVVLLPRSSVDISICSKLRVGCQQQKVNPEFSINVCNSKGMNSSKGFVSDDLVFNRNCGILQEKKFHSVKDKFTLLCEGKGISSFDANGSTSPSSSKQLQTDNNCESNQEDGLSDQRLFSCVTCGLLNFSCVAIVRPSELAARYLISAGCSSFNDWVVGSGVPNNKTTLAHEDANNPEPNMHTGWTKTNTQVEAVNTEGGNDNTALALLASAYANSSDSEEDAIDDHELNAINSTSESFPSNVQASHANPMTRHDKDDILSESTSYQAHISEVNLNRPQEQSFAEQNYKVTSEAAFENTRPVPYSISYSSQDANNAEKSLSAEAMVAVNHKNALLVPQCDEDSTRMHVFCLEHAVEAEQQLRPIGGAHIVLLCHPDYPKIEAEAKLWAEDLGIDYSWKNIAYRHGTKEDEERIQAAVDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNPVIYYAFGRSSPASSPIEPKVYQRRTDRQKKVVAGKWCGKVWMSNQVHALLAKMDSEDVEDEEILHRLISPDVKIERSGSTPKTETASTKSGRKRKMFLNKGRTRKGSFVENEMVLENSTEDKSNKSNPQERRILRSKQAKGVEKDGAALHRDFSPYRRRKPMSKQKNCTESDVVSDDQFIDNDVVSDDAVDYDSDCHQMGELRSSQVEDTERDSISEDSLDVGSLQLQIETSRSKHANVISEDDAISDDQMENGCQKQRKRIPKSRKGNSLAEKDSVTSDDQLELNIQKQRRGNSRSRKLKYLHEDDIVSDNQTNIYCRKYQRRTVKVRQAKCVAREDVMSDDQLDDPYQKQKPRISRRKNKGINREFKNEVSDDQQDGHFQKQQQKIPKSRRHTIQTDEEVIDDSADDNACLLHRTSKRKKAKFKDEDDMSLDNEIEDDSLPQHKTLPSKQSKPKTLKQMKQSKSFSMKNQTPRPVKRGAQMLMKSKVAQQVKQPSHLRNKQSGNSREPSLDLEEEDVGGPSTRLRKRLPKAQESEVKSKDKQTKRKRTKDATAATHVSARNAKTENEEAEYQCDIEGCTMSFESKQELLQHKKNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYICAEPGCAQTFRFVSDFSRHKRKTGHLTKKSRQ 1565
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi33g00009 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 1534 1558 IPR013087 -
Vivi33g00009 1565 SUPERFAMILY Clavaminate synthase-like 192 361 - -
Vivi33g00009 1565 SMART c2h2final6 1472 1496 IPR013087 -
Vivi33g00009 1565 SMART c2h2final6 1502 1526 IPR013087 -
Vivi33g00009 1565 SMART c2h2final6 1449 1471 IPR013087 -
Vivi33g00009 1565 SMART c2h2final6 1532 1558 IPR013087 -
Vivi33g00009 1565 SUPERFAMILY beta-beta-alpha zinc fingers 1488 1530 IPR036236 -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 653 668 - -
Vivi33g00009 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 1502 1531 IPR013087 -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 1364 1384 - -
Vivi33g00009 1565 FunFam Probable lysine-specific demethylase ELF6 1499 1528 - -
Vivi33g00009 1565 Gene3D Classic Zinc Finger 1470 1556 - -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 506 527 - -
Vivi33g00009 1565 SMART cupin_9 178 347 IPR003347 -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 653 674 - -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 981 1028 - -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 1322 1351 - -
Vivi33g00009 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 1532 1563 IPR013087 -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 1385 1431 - -
Vivi33g00009 1565 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 1310 1441 - -
Vivi33g00009 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 1472 1501 IPR013087 -
Vivi33g00009 1565 SMART JmjN_1 19 60 IPR003349 -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 950 1028 - -
Vivi33g00009 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 1504 1526 IPR013087 -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 1237 1257 - -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 1218 1278 - -
Vivi33g00009 1565 MobiDBLite consensus disorder prediction 1118 1155 - -
Vivi33g00009 1565 Pfam jmjN domain 21 54 IPR003349 -
Vivi33g00009 1565 Gene3D Cupin 13 351 - -
Vivi33g00009 1565 ProSiteProfiles JmjC domain profile. 178 347 IPR003347 -
Vivi33g00009 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 1474 1496 IPR013087 -
Vivi33g00009 1565 Pfam JmjC domain, hydroxylase 211 329 IPR003347 -
Vivi33g00009 1565 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 1498 - -
Vivi33g00009 1565 FunFam Probable lysine-specific demethylase ELF6 13 351 - -
Vivi33g00009 1565 SUPERFAMILY beta-beta-alpha zinc fingers 1520 1554 IPR036236 -
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi33g00009 764 865 C2H2 Transcription Factor Family AT5G04240 31.373 5.87e-14 75.5
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi33g00009 JmjC 1.6e-36 CL0029
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi33g00009 - - psat:127084261 2808.86