Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi33g00006 ATGGGTCGCAATCCTAAAGTGTGTACCTCTTGTATTCACAACTGTCGAATGTTTCATCGCCCTCTCCCACCAACCACAACCTCACCTTCCTCTTTCTACAAGTTCATGCTTCGTCGAAGCGATCTCAAACTTCTGTATCTTCCTCCTAAGCTAAAACGCACTATGTCTGGTTTGGTTGGTAAGAGCTTCAATCTTGAGGATTCAACTGGTAGTAGATGGGATGTAACATTATCAAATGTTGATGATTCTTTAGCTTTTAAGGAAGGATGGGATGTTTTCTCACTGGATCACAAGCTTGAAGTAGGAGATTTAGTGGTATTCAGTAGCATTGACAAACTGAAGTTCGGTGTCAAGATCTATGATGAATCTGTGTGTGAAAGGGTTGATTTTTCTAAAACAAGAATTAGGAAAAAGAGAGATAGAAATGGAGAGTTTGTTAGACAAGATCCAAATGCTTCACTTGTTGACTTGCAAACTGATGTGCCAATGCAAAACCAGCATATGGAGATTGATTTAGGAGGAACACAAAATAATATTGGAGACACATGTTTCATAACAAGCAATGCATATCAAAATGATGCATCCTTTTTAAACAAAGATCCTATGGTTGAAGAAGTGCTGGGTACAGGAGATGCCTCATATGCATCTAAACTTGAGTTGCATGGAAGGAACAATTGTCCAATGGAGCACAAATATCCTGATTTCGTACTAGTAGAAAATAACGAGCACAGGTCGATTAGGTCCAATGGAGAAGTTCAAGAGGGCGAGGGCCAGTTCGCCGCGGGATTAGGGAGTGATCATGCGGCGATTTCCAGAGGAAAACATGCCTTGCATGCATTCGAACTTGAAACTTCTGGAAGAAACAATTCTCTTGGTGAATCAGACAAAAATGCATATGAAAAGACTTCAATTTTGAAACATGAAGAATACAAGAAGGGAAAGTCCCTTCTGTCCGAAAAGGAAATTCCAGAGTGCAGTTTTGCTGAAGGTTTAGGTCAGAGGAAGAAACTGTGTATGAACATAACCCCCAAAAGGCTGCGTGGTTTTAATGATAAATTGTGCGGAACAGAGCTGCCAAAGGTTATTAAGGGAAAGCTTAATCAAAATAATGAAGGTCACTTTGAAACTGCCGCCACTGTCTCCTGTGAGAATTCCAAAGAGAGGTTCAATAAAATATCTAATCTCTTAGATGATTGTATTTACTTAGGTGGGACAAAGGAACTGCCGGTGGAAACGACGCCCAAATTATGCAGTGTCAACGATAAAATAAATGTGACAGGGATGACAGAGGTTATTAAGAGAGAGTTGAATGAAGATGAAACTTCTGCAACTGTCACTGATAAAGATCATCTTGAATTGTCAGAACCCTTGCCGTTATCTCGTGTTGGATTAGGATCAAAGACGACGATGGTGGTGATTCTTAAAGATCCATTGACGAGAAAGTGGCCGGTCCTTTGCACTGAAAAAACTTGTTTGAGAAGTGGATGGTCAGATTTTCAAAGAGCAAATAATATTAAAACCGGTGACGTGTGTGTTTTTAAGGTCGAAAATAAGTATGAACACATCGTCGCTGTACATACAGACCACAAGTGA 1593 0.4011 MGRNPKVCTSCIHNCRMFHRPLPPTTTSPSSFYKFMLRRSDLKLLYLPPKLKRTMSGLVGKSFNLEDSTGSRWDVTLSNVDDSLAFKEGWDVFSLDHKLEVGDLVVFSSIDKLKFGVKIYDESVCERVDFSKTRIRKKRDRNGEFVRQDPNASLVDLQTDVPMQNQHMEIDLGGTQNNIGDTCFITSNAYQNDASFLNKDPMVEEVLGTGDASYASKLELHGRNNCPMEHKYPDFVLVENNEHRSIRSNGEVQEGEGQFAAGLGSDHAAISRGKHALHAFELETSGRNNSLGESDKNAYEKTSILKHEEYKKGKSLLSEKEIPECSFAEGLGQRKKLCMNITPKRLRGFNDKLCGTELPKVIKGKLNQNNEGHFETAATVSCENSKERFNKISNLLDDCIYLGGTKELPVETTPKLCSVNDKINVTGMTEVIKRELNEDETSATVTDKDHLELSEPLPLSRVGLGSKTTMVVILKDPLTRKWPVLCTEKTCLRSGWSDFQRANNIKTGDVCVFKVENKYEHIVAVHTDHK 530
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi33g00006 530 CDD B3_DNA 60 121 IPR003340 GO:0003677
Vivi33g00006 530 SMART B3_2 32 123 IPR003340 GO:0003677
Vivi33g00006 530 SMART B3_2 441 528 IPR003340 GO:0003677
Vivi33g00006 530 CDD B3_DNA 464 514 IPR003340 GO:0003677
Vivi33g00006 530 PANTHER B3 DOMAIN-CONTAINING 27 518 - -
Vivi33g00006 530 Gene3D - 443 528 IPR015300 -
Vivi33g00006 530 Gene3D - 25 125 IPR015300 -
Vivi33g00006 530 ProSiteProfiles B3 DNA-binding domain profile. 436 529 IPR003340 GO:0003677
Vivi33g00006 530 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Vivi33g00006 530 SUPERFAMILY DNA-binding pseudobarrel domain 29 125 IPR015300 -
Vivi33g00006 530 Pfam B3 DNA binding domain 463 518 IPR003340 GO:0003677
Vivi33g00006 530 Pfam B3 DNA binding domain 33 121 IPR003340 GO:0003677
Vivi33g00006 530 SUPERFAMILY DNA-binding pseudobarrel domain 465 526 IPR015300 -
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi33g00006 47 126 B3 DNA Binding Superfamily AT3G18960 26.250 1.25e-06 47.0
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi33g00006 B3 1.4e-10 CL0405
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi33g00006 - - vvo:131622035 1063.14