Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi337g00040 ATGGAAATGGAAGATTTTGATTGGGGTTATGATATACTTGGAGATGCCACTAATGGTTTTCAAGTAAACAATGATGTAATGAAAAGTGGCTATGGTTCATCTTTCTCTCTTGTTTTGGATAGAGAAAGAGAAATGCTTGTGAAAGCACCTGCAAAAATGGAACAAAAAGGTGTGTCTACTGAGAGAACTGCAGAAGCTTTGAAGAATCACAGTGATGCAGAGAGAAGAAGAAGAGCTAGAATTAACTCACATCTCGATACACTTCGCAGTATCATTCCAGGTGCTTTGAAGATGGACAAAGCATCGTTACTTGGTGAAGTTATTCGACATTTAAAAGAGGTAAAAAGAACCGCAACACAAGCGTGCGAAGGTTTAATGATACCAAAGGACAACGATGAAATAAGCGTTGAAGAACAAGAATGTGGATTCAATGGTTTTGCTTATTCAATTAAAGCATCACTGTGTTGTGAGTATCAACCTGGTTTGTTGTCTAGTATAAGACAGGCACTAGAGGCTCTTCGTCTCGTAATCATGAAGGCGGATATTGCGACTTTTGGTGGTAGAATGAAGAATGTGTTTGTTGTAATTAGTTGTGAGGAGCAGAGTTTTGATGATGCTGAATATAGACAGTTTCTTGCTGGTTCTGTTCATCATGCTCTTAAGTCTGTGGTTAGTAGATTTTCTGTTTCACAGGATGTGTTAGGAGCTAGGAAAAGAAGGAGGGTTTCTATATTTAGTTCTTCATCTTTAGAAGATTTCTTATAA 765 0.3778 MEMEDFDWGYDILGDATNGFQVNNDVMKSGYGSSFSLVLDREREMLVKAPAKMEQKGVSTERTAEALKNHSDAERRRRARINSHLDTLRSIIPGALKMDKASLLGEVIRHLKEVKRTATQACEGLMIPKDNDEISVEEQECGFNGFAYSIKASLCCEYQPGLLSSIRQALEALRLVIMKADIATFGGRMKNVFVVISCEEQSFDDAEYRQFLAGSVHHALKSVVSRFSVSQDVLGARKRRRVSIFSSSSLEDFL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi337g00040 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Vivi337g00040 254 MobiDBLite consensus disorder prediction 58 76 - -
Vivi337g00040 254 Pfam Helix-loop-helix DNA-binding domain 69 113 IPR011598 GO:0046983
Vivi337g00040 254 MobiDBLite consensus disorder prediction 52 76 - -
Vivi337g00040 254 PANTHER TRANSCRIPTION FACTOR BHLH30 43 246 IPR045847 GO:0003700|GO:0006355
Vivi337g00040 254 Gene3D - 59 122 IPR036638 GO:0046983
Vivi337g00040 254 CDD bHLH_AtAIG1_like 60 136 - -
Vivi337g00040 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 118 IPR036638 GO:0046983
Vivi337g00040 254 SMART finulus 71 120 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi337g00040 51 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.640 2.35e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi337g00040 HLH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi337g00040 - - aprc:113859663 384.03