Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi337g00020 ATGGCGGGTCCTCTTCTTCTTCGTTCTCTCTTGTCTTCCACCAGAAAGTCACTTTCCACTTCATACCCCTCTCGTTACTTCTCCCGCTCTTTCTCCGCCGCTCCCGCCGCCGCCTCCTCTTCCGATCCCACCGGATGCCTTGACCCCGGCCGCCTTCGCAACGTCGCCGTCATAGCTCATGTCGACCACGGTAAGACAACGCTCATGGACCGTCTGCTTCGCCAGTGCGGCGCTGATATCCCGCACGAGCGCGCCATGGATTCCATCACTCTCGAACGCGAGCGCGGCATCACTATCTCTTCCAAGGTTACTTCTATTGCGTGGAAAGAAAATGAGCTCAACATGGTGGATACTCCTGGACATGCTGATTTTGGTGGCGAGGTTGAACGAGTAGTTGGTATGGTTGAGGGAGCAGTTTTGGTTGTTGATGCCGGGGAAGGTCCACTTGCTCAAACTAAGTTTGTTCTTGCGAAAGCCTTAAAGTATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGGCCTGCAGTTACTGAGGAGATATGCGATGAGGTTGAGAGTCTGGTGTTTGATCTATTTGCGAACCTGGGTGCTACAGAGGAGCAACTTGACTTCCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTATACCAAGGATCCTCCTGCCGAGGCCAAAAATATGTCACAGTTGCTTGATGCCATCGTAACACATGTTCCTCCACCAAATGCAAACATTGATGCACCTTTCCAAATGCTGGTTTCTATGATGGAGAAGGACTTTTATCTTGGGCGGATTTTGACCGGACGTGTGTATTCTGGGGTTGTTCGTGTTGGTGACAGGGTTCACGGACTACGTAACAAAGATTCTGGTGCTGAAAAGGTTGAAGAAGGAAAGGTGGTGAAGCTGATGAAAAAGAAGGGTACAGCCATGGTTGTAACTGATTGTGCTGGAGCTGGTGATATAATTTCAATTGCTGGTTTGGCAAGTCCATCTATTGGTCATACAGTCACTACTGTGGAGATTATGTCTGCATTACCCACAGTTGAATTGGATCCACCAACAATTTCTATGACCTTTGGTGTAAACGACTCCCCATTAGCTGGTCGTGATGGTACTCATTTGACTGGGGGAAGAATTGGTGATCGACTAACGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTGTCAGAAACGTTTGAAGTTCAAGGAAGAGGAGAACTGCAGCTGGGTATTTTAATTGAGAATATGAGGCGTGAGGGATTTGAGCTATCCGTCTCTCCACCTAAAGTCATGTATAAAACCGAAAAAGGTCAGAAACTTGAGCCAATAGAAGAAGTTACAATTGAGGTAAATGATGAGCACGTTGGCTTTGTAATGGAGGCTTTGTCTCACAGACGAGCTGAGGTTACCGACATGGGTCCTGTCGCCGGAGCTATTGGGCGAACTAGATTGTCCTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTGTTCAGCAGTGAGACACGTGGAACTGGGTTCATGCACCGTGCTTTCCTCACATATGAAAAATTTCGAGGCCCTCTTGGCAATGTGAGGAAAGGAGTACTGGTGTCAGTGGGTAGTGGTTCAATCACATCTCATGCATTAATGAGCTTAGAAGCTCGTGGGACTCTTTTTGTATCTCCTGGAATGGAGACATATGATGGTATGATTGTTGGAGAACACTCACGGGATACAGATCTTGATATTAATCCAGTGAGGGCTAAACAACTTACAAATATACGCTCTGCTTCCAAGGATGAGAATGTGAAGCTGACTCCACCTCGCCTCATGACGCTTGAAGAAGCTATAGGATATGTAGCTTCAGATGAGCTTATCGAGGTTACTCCAAAGACCATCCGGTTACGAAAGAAATACCTTGATGTTAACAAGCGTAAAACCATGAGTAAAAGGCCAAAGGAATGA 1983 0.4735 MAGPLLLRSLLSSTRKSLSTSYPSRYFSRSFSAAPAAASSSDPTGCLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSITLERERGITISSKVTSIAWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVTEEICDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTYTKDPPAEAKNMSQLLDAIVTHVPPPNANIDAPFQMLVSMMEKDFYLGRILTGRVYSGVVRVGDRVHGLRNKDSGAEKVEEGKVVKLMKKKGTAMVVTDCAGAGDIISIAGLASPSIGHTVTTVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLTAEAETNLAINVLPGLSETFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEKGQKLEPIEEVTIEVNDEHVGFVMEALSHRRAEVTDMGPVAGAIGRTRLSLTCPSRGLVGYRSVFSSETRGTGFMHRAFLTYEKFRGPLGNVRKGVLVSVGSGSITSHALMSLEARGTLFVSPGMETYDGMIVGEHSRDTDLDINPVRAKQLTNIRSASKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKTIRLRKKYLDVNKRKTMSKRPKE 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi337g00020 660 CDD BipA_III 359 436 IPR047043 -
Vivi337g00020 660 Gene3D Translation factors 249 353 - -
Vivi337g00020 660 Gene3D - 442 536 - -
Vivi337g00020 660 Gene3D Elongation Factor G (Translational Gtpase), domain 3 360 644 - -
Vivi337g00020 660 CDD BipA_TypA_II 255 352 IPR047042 -
Vivi337g00020 660 Gene3D - 50 248 IPR027417 -
Vivi337g00020 660 Pfam Elongation factor Tu domain 2 269 343 IPR004161 GO:0005525
Vivi337g00020 660 FunFam GTP-binding protein TypA 537 623 - -
Vivi337g00020 660 FunFam GTP-binding protein TypA 51 248 - -
Vivi337g00020 660 SUPERFAMILY EF-G C-terminal domain-like 451 567 IPR035647 -
Vivi337g00020 660 Gene3D bipa protein 537 652 IPR042116 -
Vivi337g00020 660 Pfam Elongation factor G C-terminus 449 532 IPR000640 -
Vivi337g00020 660 Pfam Elongation factor Tu GTP binding domain 51 245 IPR000795 GO:0003924|GO:0005525
Vivi337g00020 660 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 87 102 IPR031157 -
Vivi337g00020 660 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 50 248 IPR000795 GO:0003924|GO:0005525
Vivi337g00020 660 FunFam GTP-binding protein TypA 360 467 - -
Vivi337g00020 660 SUPERFAMILY EF-G C-terminal domain-like 357 440 IPR035647 -
Vivi337g00020 660 SUPERFAMILY Translation proteins 197 352 IPR009000 -
Vivi337g00020 660 NCBIfam small GTP-binding protein domain 53 188 IPR005225 GO:0005525
Vivi337g00020 660 CDD BipA_TypA_C 451 531 IPR035651 -
Vivi337g00020 660 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 49 222 - -
Vivi337g00020 660 CDD TypA_BipA 52 247 IPR047041 -
Vivi337g00020 660 FunFam Elongation factor family protein 249 353 - -
Vivi337g00020 660 FunFam GTP-binding protein TypA 442 536 - -
Vivi337g00020 660 PRINTS GTP-binding elongation factor signature 130 141 IPR000795 GO:0003924|GO:0005525
Vivi337g00020 660 PRINTS GTP-binding elongation factor signature 54 67 IPR000795 GO:0003924|GO:0005525
Vivi337g00020 660 PRINTS GTP-binding elongation factor signature 94 102 IPR000795 GO:0003924|GO:0005525
Vivi337g00020 660 PRINTS GTP-binding elongation factor signature 166 175 IPR000795 GO:0003924|GO:0005525
Vivi337g00020 660 PRINTS GTP-binding elongation factor signature 114 124 IPR000795 GO:0003924|GO:0005525
Vivi337g00020 660 NCBIfam translational GTPase TypA/BipA 52 652 IPR006298 GO:0003924|GO:0005525
Vivi337g00020 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 257 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi337g00020 51 175 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 1.89e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi337g00020 K06207 - gmx:100782425 1131.7