Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi337g00017 ATGGGAGGCTTCATGTTAGGTTCGAAGAAAAAGAAAAACAACAAAACTCAAGGCGGTTTTGAAACCATGGGTTTGAATCCCAATGTATTTAGAGGAGTCAGACGTAAAGGTTACAAAGTGCCGACTCCCATTCAGAGGAAGACGATGCCGCTAATCCTCTCCGGCGTCGATGTTGTTGCCATGGCTCGTACTGGTTCCGGCAAAACGGCTGCGTTTCTTGTTCCCATGCTTCATAAGCTTAACCAGCATGTTCCTCAGGCTGGCGTTAGAGGACTCATTTTATCACCGACTAGGGATTTGGCTATGCAGACTCTCAAGTTCACTGAAGAGCTTGGTCACTTTACAGATCTTCGTGTTAGTTTGTTGGTTGGCGGTGATAGTATGGAAAGTCAGTTTGTGGAGTTATCTCAGAGTCCTGACATTATAATTGCCACTCCTGGGAGGCTTATGCATCATTTGTCTGAGGTTGATGACATGTCGTTGCGTAAAGTGGAGTATGTTGTTTTTGATGAGGCTGATTGTTTATTTGGTATGGGTTTTGCTGAGCAGCTACATCAAATTCTTGGTCAGCTTGGTGATAATCGTCAGACCTTGCTTTTCAGTGCGACATTACCTAGCGCTCTTGCGGAATTCGCTAAGGCTGGTCTGCGAGAGCCTCGCCTTGTTCGTCTAGATTTGGAAACTAAAATTAGTCCTGATTTGAAGCTTGTGTTTTTCACTTTGAGGCAAGAAGAGAAGTATGCCGCTTTGTTATATTTAATCAGGGAACTTATTGGTTCTGATGAGCAGACTTTAATTTTTGTATCTACTAAACATCATGTTGAGTTTCTCAACTCGTTGTTTCAACAAGAGGGTATTGAGCCTTCTGTGTGTTATGGAGACATGGATCAAGATGCTCGCAAAATGCATGTGTCTAGGTTTAGGTCAAGGAAGACAATGTTGTTGATTGTCACCGATATTGCTGCTCGAGGGATTGACATTCCGTTGCTTGATAATGTTATCAATTGGGACTTCTCGCCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGTTGCAAGGGCGGGTCGTACTGGTACTGCTTATTCGTTTTTGACTACCGAGGATATGGCTTATCTCTTGGATCTTCATTTGTTTCTTTCAAAACCAGTCAAAGCTGCTCCCACTGAAGAAGAGGTCTTGAAGGATATGGATGGAGTAATGTCAAGAATTGACCAGGCAATGGCAAACGGAGAAACCATTTATGGTCGTTTCCCTCAAAAAGTTATTGACCTTGTTTCTGACAGGGTTAGGGAAGTTATTGATACTAATGCGGAGCTGGAAGCGTTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCTAAAACTAAACCCTTACCCTCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCACCAGAAGGTCTGCATCCAATTTTTAACAAAGTGTTGGGGACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAAACATTTAGGCCAAAGCAGACCATTTTGGAAGCAGAAGGAGAAGCAGCTAAAGCAAAGCGTAAAGCAGGCCCTTCTGGTCAATGGGTTGATGTGATGAAAAGGAAAAGAGCCATTCATGAATCTACTATAAATTTGTTTCTTGAACAAAAGTCTAAGAGTACTAGTGAAAAGGAGGAATATCAACAGGAACCTACTTCAGCAGGGAAAGGGAGAAAAGCACGTGGTACTAAGAGAAAGCAAGAAAGTTTCAAGGACGAGGATAACTATATAAGTTCCATACCTAAAAATCGTCACATGGAGGCAGGCCTCGCAGTAAAAGCTAATGAAGGCTTTTCTTCAAATAGATTGGAAGAAGCTGTCCTAGATCTAGTTGCAGATGATGGTTCTGGCATTAAGAAACAAAAATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTGAACAATGGCGACCGTGTTACAGCAAGTGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCAACAAGACTGGCATCTATAAAAAGTGGAAGGAACGCTCACACTCCAAGATATCTCTTAGAGGGACAAATACTGATGGTGATGCTCAGGAATCAACAAGTTCGAAAGGATCTTACCGAGGAAGTGGTAGGAATTTTAACGATAGGAATTTTAGAGACGGCAGGAAGCAGCATTCAATGCCAAATGCTCATGTGCGTCCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAGAAAGCCAGCAAAATTTCTTATATGAAGAGCAAGTCGCCAAAGGGCAAAAAATCTGGCAGAAAGGGGGGCAATAAGGGCAACAAGGGGGGAAATAAAAGAAGAGGGGCTAAGTAA 2370 0.4224 MGGFMLGSKKKKNNKTQGGFETMGLNPNVFRGVRRKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLVPMLHKLNQHVPQAGVRGLILSPTRDLAMQTLKFTEELGHFTDLRVSLLVGGDSMESQFVELSQSPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILGQLGDNRQTLLFSATLPSALAEFAKAGLREPRLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLIRELIGSDEQTLIFVSTKHHVEFLNSLFQQEGIEPSVCYGDMDQDARKMHVSRFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFSPKPKIFVHRVGRVARAGRTGTAYSFLTTEDMAYLLDLHLFLSKPVKAAPTEEEVLKDMDGVMSRIDQAMANGETIYGRFPQKVIDLVSDRVREVIDTNAELEALQRTCKNAFRLYSKTKPLPSKESIRRVKDLPPEGLHPIFNKVLGTGELTALAFSEHLKTFRPKQTILEAEGEAAKAKRKAGPSGQWVDVMKRKRAIHESTINLFLEQKSKSTSEKEEYQQEPTSAGKGRKARGTKRKQESFKDEDNYISSIPKNRHMEAGLAVKANEGFSSNRLEEAVLDLVADDGSGIKKQKSVYHWDKRSKKYIKLNNGDRVTASGKIKTESGAKTKANKTGIYKKWKERSHSKISLRGTNTDGDAQESTSSKGSYRGSGRNFNDRNFRDGRKQHSMPNAHVRPEIKDMDQIRKERQKKASKISYMKSKSPKGKKSGRKGGNKGNKGGNKRRGAK 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi337g00017 789 SMART ultradead3 37 237 IPR014001 -
Vivi337g00017 789 MobiDBLite consensus disorder prediction 691 716 - -
Vivi337g00017 789 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Vivi337g00017 789 MobiDBLite consensus disorder prediction 652 789 - -
Vivi337g00017 789 CDD SF2_C_DEAD 244 365 - -
Vivi337g00017 789 MobiDBLite consensus disorder prediction 551 565 - -
Vivi337g00017 789 Gene3D - 5 225 IPR027417 -
Vivi337g00017 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Vivi337g00017 789 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 687 - -
Vivi337g00017 789 SMART DBP10CT_2 622 684 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vivi337g00017 789 MobiDBLite consensus disorder prediction 757 789 - -
Vivi337g00017 789 SMART helicmild6 275 356 IPR001650 -
Vivi337g00017 789 CDD DEADc_DDX54 18 223 IPR033517 -
Vivi337g00017 789 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Vivi337g00017 789 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Vivi337g00017 789 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Vivi337g00017 789 Gene3D - 235 460 IPR027417 -
Vivi337g00017 789 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Vivi337g00017 789 MobiDBLite consensus disorder prediction 676 690 - -
Vivi337g00017 789 MobiDBLite consensus disorder prediction 548 591 - -
Vivi337g00017 789 MobiDBLite consensus disorder prediction 1 23 - -
Vivi337g00017 789 MobiDBLite consensus disorder prediction 717 756 - -
Vivi337g00017 789 MobiDBLite consensus disorder prediction 657 671 - -
Vivi337g00017 789 Pfam DBP10CT (NUC160) domain 622 683 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi337g00017 20 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.720 2.43e-56 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi337g00017 K14808 - gmx:100806274 1229.54