Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi337g00002 ATGTTAACAAAAATGAATGAAGTAGAACTCTCAAATGTTAATTTCCTTCAAAATTCAACTACTAGTGCTTCCATTAATCCTCCTCCTTTGAAGAGAAAAAGAAACCTCCCCGGAAATCCAGATCCTGAAGCTGAAGTTATCGCTTTATCGCCGAAGACTTTAATGGCAACAAACAGATTCTTGTGTGAAACATGCGGGAAGGGTTTTCAAAGAGATCAGAATCTACAACTACATCGACGGGGACATAATCTTCCGTGGAAGCTTAAGCAGAGAACAAACAAGGAAATAAAGAAGAGAGTTTATGTCTGTCCTGAGAAGAGTTGTGTTCATCATGATCCTTCAAGAGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCAAAACGCTATGCTGTTCAGTCAGATTGGAAAGCTCATTCGAAAACATGTGGTACTAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATAACTCATAGAGCTTTCTGTGATGCCTTAGCAGAAGAAACGGCAAGGGTAAGTGCAGCCTCAGAAATAAACCACAACTCATTAAGGGGTAACATTGGTAATAATTACAACATAATGGGAACATCTTTAGTCCCTAACAACAACATGTCAACTCATTTTCCTTCAATTTTCAAAACAATTTCATCTCCTGATCATCATCATCATGAAACAACAACCAATCAAACTAGAGGTCTCTCCCTTTGGATGAGCCAAACATCTCAGCCTCATGAAACAATGATAACCACCAATGGAAACAACAATTTGCATGAGATTCATGTTAATCAACATCTTGACTCATCGTCAAGAGGATTAATGTACGGTGGGATCGAGAATCCAAACTCGAATAACTATCAGTTGAATTGGGTTTTTGAAAATAAACTTCCCTCAAATTGTAGCCAAGAGTTAATTACTAGCACAACAACTTCACTTCCACTAGGAAACAATAATGTTAATGTTAAGGATGTTGCTATTCATCATGATGCTACTACAAGCCAACAATTATCTTCCTTGTATAGCTCACAACACCAAATACCATCACATCAAACATCATCATCGGCAAACATGTCAGCTACAGCTTTGTTACAGAAAGCTGCTCAAATCGGAGTAACCTCGACCGACACATCATTCCTCGGAAGCTTAGGTTTGAAATGCAGTGACAATACTAATATTGATGTGAACAAGTTTGGTGGTGGTGCTGGTTTGTATGGTTCAAGTTCATTGCTCATTAGTCTTGGAAATGAGGAAGATCATAATGCTGCATGTGATTTCTCACAAATGCACCCTTCTAAACGTAGACATGTCCAGAGTGAAGAGAATGGAGGTGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGTCACCCTTCATCAATCAACGGATGGATTTGA 1470 0.3905 MLTKMNEVELSNVNFLQNSTTSASINPPPLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIKKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINHNSLRGNIGNNYNIMGTSLVPNNNMSTHFPSIFKTISSPDHHHHETTTNQTRGLSLWMSQTSQPHETMITTNGNNNLHEIHVNQHLDSSSRGLMYGGIENPNSNNYQLNWVFENKLPSNCSQELITSTTTSLPLGNNNVNVKDVAIHHDATTSQQLSSLYSSQHQIPSHQTSSSANMSATALLQKAAQIGVTSTDTSFLGSLGLKCSDNTNIDVNKFGGGAGLYGSSSLLISLGNEEDHNAACDFSQMHPSKRRHVQSEENGGGGQTRDFLGVGVQTICHPSSINGWI 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi337g00002 489 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 477 IPR031140 -
Vivi337g00002 489 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Vivi337g00002 489 FunFam protein indeterminate-domain 12-like 39 107 - -
Vivi337g00002 489 Gene3D Classic Zinc Finger 94 184 - -
Vivi337g00002 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Vivi337g00002 489 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Vivi337g00002 489 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Vivi337g00002 489 Gene3D Classic Zinc Finger 56 83 - -
Vivi337g00002 489 MobiDBLite consensus disorder prediction 19 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi337g00002 24 489 IDZ Gene Family AT1G03840 52.079 2.05e-150 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi337g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi337g00002 K25870 - qsu:112011855 592.423