Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi334g00007 ATGTTGATACCGCTTTCAGTTGTTGATGATGTTGCTGTCTTGGATTTAGGTCAAGAACTTCCTCGTACCCAGAACAACATGTTGCCTGTGTTTGTTCTCTTTGATTCTCGTACCATGTCTCACTACCACCACCCAACAACAACAACAACACCTTCTTCTTCTTCGTCTCACAACCACAACAATGTTCCAACAAGATTAATGTCTCACAACCGCAACAACGTTTCATCAAGACCAACCGTCTCTATGGTAGATGAAACTCTTCTCTATGATTCTTCTATGGCCAACAACATTCCAAGAAGATCAAGGTCATTTAATCATCCCCGCCACCACCACAACAATGGTACTAGAGCTTCTTCCCCTGTCATCGGTGCTGCTGCTGTGGTGATGGGTGTTCAAGAACATGTTACAACATCAACAGGAGATGCAGAATCCATCTGTTCCATTTGTCTTGTTGACTTGCCTAATGCTTCTTCCACGCCGATTGGGTTGCGCTGCTCTCATGTTTTTCATACTCACTGCATTCAAAAATGGATTAACATTCGAAAAACTTGTCCTCTCTGCCGCGCCAGTGTTTAA 576 0.4358 MLIPLSVVDDVAVLDLGQELPRTQNNMLPVFVLFDSRTMSHYHHPTTTTTPSSSSSHNHNNVPTRLMSHNRNNVSSRPTVSMVDETLLYDSSMANNIPRRSRSFNHPRHHHNNGTRASSPVIGAAAVVMGVQEHVTTSTGDAESICSICLVDLPNASSTPIGLRCSHVFHTHCIQKWINIRKTCPLCRASV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi334g00007 191 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Vivi334g00007 191 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 77 191 IPR044675 -
Vivi334g00007 191 SMART ring_2 146 187 IPR001841 -
Vivi334g00007 191 SMART ringv_2 145 188 IPR011016 GO:0008270
Vivi334g00007 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 191 IPR013083 -
Vivi334g00007 191 Pfam Ring finger domain 146 188 IPR001841 -
Vivi334g00007 191 MobiDBLite consensus disorder prediction 42 61 - -
Vivi334g00007 191 SUPERFAMILY RING/U-box 145 191 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi334g00007 140 191 C3H Transcription Factor Family AT5G47610 40.385 1.74e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi334g00007 - K19038 vvo:131593264 261.151