Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi334g00002 ATGGCAGCAACAAAAACAAAAGCCATAGGCATCGACCTTGGCACGACCTACAGTTGCGTAGCGGTATGGCGAAACAATCGTGTTGAGATCATTCCAAATGACCAAGGAAACCGCATCACCCCGTCTTATGTCGCCTTCACTGAAACCGAAAGGCTAATAGGTGATGCTGCCATAAACCAGTTAGCCACTAATCCCGACAACACTGTTTTCAATGTCAAACGCTTGATTGGTCGTCGGTTCTCCGACCCTTCAGTTCAACAAGACATAAAGCTTTGGCCTTTTAAGGTTGTCCCAAACAACAAAGACAAACCAATGATTGTGTTTAGTTACAAAGGCGAAGAGAAACGTATTTCACCTCAAGAGATATCCTCCATGGTGCTGTCAAAGTTGAAGGATGATGCTGAAGCTTATTTGGGCCATGAAGTGAAAGATGCTGTTATCACTGTTCCTGCTCACTTCAACAACTCTCAGAGACAGGCTACAAAAGATGCAGGGAAAATCGCTGGTTTTAACGTGATGCGGATCATCAATGAGCCTACTGCAGCTGCTATTGCTTATGGTTTTGACAAGATGAACTGGAGAGAAGGTGAGAAGAATGTGCTTGTGTTTGATCTTGGCGGTGGAACTTTTGATGTTTCCTTGGTGACCAATGTTGAAGGAATGTTCAAGGTTAAGTCTACATTGGGAGATACTCATTTGGGTGGTGTTGATTTTGATAACAATTTGGTGAACCGTCTTGTCGAACTGTTTCGTAGAAAGTATAAGAAGGATTTGAACATCAGTGAAAACTCCAAAGCTTTGGGGAGGTTAAGGTTAGCATGTGAGAAAGCAAAAAGATTACTTTCTTCAACTTCAATGACAACCATTGAGCTTGATTCTCTATGTGGAGGAATTGATCTACATGTCACTGTTACTCGAGCTTTGTTTGAGGAAATAAACAAAGATTTGTTCAGAAAGTGCATGGAGACTGTGGAAAAGTGTTTGAGTGAGGCAAAGATTGATAAAAACCAAGTTCATGATTTTGTTCTTGTAGGAGGGTCTACTAGAATTCCAAAGATTCAACAATTGTTAAAGGAGATGTTCAGAGTTGACGGCGAAATCAAAGAGCCTTGCAAAAGCATTAATCCTGATGAAGCTGTGGCTTATGGTGCAGCAGTTCAAGCGGCAATATTGAATGATGAAGGAGACAAGAAAATCGAAGACTTGTTGTTGTTGGATGTTATGCCTTTTAGTCTTGGTGTTGAGACAGATGATGGTGTCATGTCTGTTTTGATTCCTAAGAATACAATGATACCTACCAAAAAGGAGAGTGTTTTTTCTACACTCTCTTGTAATCAAGACAGTGTTTTGATCAAAGTGTATGAAGGAGAAGGAGTTAAGACTGAGGATAACATTTTGCTTGGGAAATTTGAGCTACAAGGATTCACTTCAACACCTAGGAAGGTTCCAAATATCAATGTTTGTTTTGATGTTGATGTGAATGGTATTTTAGAGGTCACTGCTGAAGATAAGACACAAGGGTTGAGAAAGAAGATTACTATCATCAACAAGGAGGGAAGGTTGAGTAGTGAAGAGATGAGGAGGATGGTGAGGGATGGAGAGAGGTATAAGGTAGAAGATGAGGAGGTGAGGAAGAAGGTGAAGGCAAAGAACTTGTTTGAGAATTATGTTTATGAAATGAGGGAGAAAGTGAAGAGGCTTGAGAAGGCTGTGGAGGAAACTATTGATTGGTTTGATAGAAATCAATTGGCTGAAATTGATGAGTTTGAGTTCAAGAAACAGGAGTTGGAAAAGAATATGAAGGCTATTTAA 1812 0.4034 MAATKTKAIGIDLGTTYSCVAVWRNNRVEIIPNDQGNRITPSYVAFTETERLIGDAAINQLATNPDNTVFNVKRLIGRRFSDPSVQQDIKLWPFKVVPNNKDKPMIVFSYKGEEKRISPQEISSMVLSKLKDDAEAYLGHEVKDAVITVPAHFNNSQRQATKDAGKIAGFNVMRIINEPTAAAIAYGFDKMNWREGEKNVLVFDLGGGTFDVSLVTNVEGMFKVKSTLGDTHLGGVDFDNNLVNRLVELFRRKYKKDLNISENSKALGRLRLACEKAKRLLSSTSMTTIELDSLCGGIDLHVTVTRALFEEINKDLFRKCMETVEKCLSEAKIDKNQVHDFVLVGGSTRIPKIQQLLKEMFRVDGEIKEPCKSINPDEAVAYGAAVQAAILNDEGDKKIEDLLLLDVMPFSLGVETDDGVMSVLIPKNTMIPTKKESVFSTLSCNQDSVLIKVYEGEGVKTEDNILLGKFELQGFTSTPRKVPNINVCFDVDVNGILEVTAEDKTQGLRKKITIINKEGRLSSEEMRRMVRDGERYKVEDEEVRKKVKAKNLFENYVYEMREKVKRLEKAVEETIDWFDRNQLAEIDEFEFKKQELEKNMKAI 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi334g00002 603 FunFam Heat shock protein ssb1 70 125 - -
Vivi334g00002 603 FunFam Heat shock protein 70 9 198 - -
Vivi334g00002 603 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 398 554 IPR029047 -
Vivi334g00002 603 SUPERFAMILY Actin-like ATPase domain 197 391 IPR043129 -
Vivi334g00002 603 Pfam Hsp70 protein 8 601 IPR013126 GO:0005524|GO:0140662
Vivi334g00002 603 FunFam Heat shock 70 kDa protein 395 550 - -
Vivi334g00002 603 Gene3D - 191 371 - -
Vivi334g00002 603 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 549 602 IPR029048 -
Vivi334g00002 603 Gene3D - 550 603 IPR029048 -
Vivi334g00002 603 PRINTS 70kDa heat shock protein signature 35 47 - -
Vivi334g00002 603 PRINTS 70kDa heat shock protein signature 57 65 - -
Vivi334g00002 603 PRINTS 70kDa heat shock protein signature 7 20 - -
Vivi334g00002 603 PRINTS 70kDa heat shock protein signature 145 165 - -
Vivi334g00002 603 PRINTS 70kDa heat shock protein signature 374 394 - -
Vivi334g00002 603 PRINTS 70kDa heat shock protein signature 482 498 - -
Vivi334g00002 603 PRINTS 70kDa heat shock protein signature 401 420 - -
Vivi334g00002 603 PRINTS 70kDa heat shock protein signature 208 218 - -
Vivi334g00002 603 Gene3D Actin; Chain A, domain 4 234 319 - -
Vivi334g00002 603 Gene3D - 9 389 - -
Vivi334g00002 603 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 396 549 IPR029047 -
Vivi334g00002 603 FunFam Heat shock 70 kDa 234 319 - -
Vivi334g00002 603 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Vivi334g00002 603 PANTHER HEAT SHOCK PROTEIN 70KDA 8 574 IPR013126 GO:0005524|GO:0140662
Vivi334g00002 603 Gene3D - 70 125 - -
Vivi334g00002 603 SUPERFAMILY Actin-like ATPase domain 7 189 IPR043129 -
Vivi334g00002 603 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi334g00002 1 597 Calmodulin-binding Proteins AT1G16030 67.430 0.0 836