Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi332g00001 ATGGCGGGAGGCACAAGACCAAACCCACTCGACAGGCAGTACATGTTACGTGCATTGAAGGAGCTGTCTCAGCCAACGTCAGAAGTTAATCTCCCAGATGGGCTATTGGCAGTTCCTCTTTTACGTCATCAGAGAATCGCTTTATCGTGGATGGTTCAAAAGGAAACATCAAGTTTATGCTCTTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACTGTGTCAACTATTGCTTTAATACTAAAGGAAAGGCCTCCGTTGCTCGAGACGTGCAACACTGCACAAAATAGTGTATTAGAAATCGTGGATTTGGATGATGATCCACTTCCTGAGAATGGTTTAATGACGAAGGAATTTGACGCGCCTCAAGATACATCTAGAAATGGAAAAGCGATCACAAGTGTGAATTCTTCGGTTCATGCAAAGGGCAGGCTATCTGCAGGAACCCTTGTTGTTTGTCCAACCAGTGTCCTGCGACAGTGGGCTGACGAACTGGCTAATAAAGTAACCTGGAGAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGCAATCGAAACAAAGATCATCATGAGCTTGCCAAGTATGATGTTGTTTTGACTACTTATTCAATTGTTAGCCTAGAGGTCCCTAAAGATGACGGAGAAAAAGAAAGTGCTACGACGAGTAAGAAAAGGAAATGCACTTCTAGTTCAGAAAGCGGCAAGAAGATGCTTAAGGATGATGCAGGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTCGTCCTTGATGAGGCCCAAAGTATAAAGAATTACAGAACTCTTGTTTCAAAGGCTTGCTGGGGTCTTCGAGCTAAGCGCAGATGGTGCTTGTCCGGAACTCCAATCCAGAATTCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGATGAGCTCGAAACATTCTGTTCAAAAATCAAGGTTCCTATCACCAATAATCCACGAATAGGGTATTCAAAGCTGCAAGCTATCTTAAAAATTATCATGTTACGTCGGACAAAAGACACAGTTCTTGATGGGCAGCCTATTATATCTTTGCCACCTAAACGTGTGAAGTGCAAAAGAGTGACATTTTCACAGGAGGAACATGACTTCTATTCCAAGCTAGAGACTGATTCACGTGCACAGTTTCAGGAATACGCCGATGCTGGTACTGTGAAGCAAAACTATGTTCACATTTTATCGATGCTTTTGCGCCTTAGACAAGCTTGCAACCACCCTCAACTTGTTAAGGGTTACAATTCTACTTCTCCCTGGACATCTTCAGTTGAGACGACCGTTAAGATTCCTCGGGAAAGACAGCTTATTCTTTTGAAATGTTTAGAGGCTTGCGTGGCTCTTTGTGGTATCTGTAATGATGTTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCATATTTTCTGTAACCAGTGCATTTCTGAACATCTAACTGGGGAGGACATTCAGTGCCCTGCTACAAACTGCAAAACTGATCTTAGCAGGTGTTCAGTGTTTTCCGAAGCCACACTGAAGAATTCTTTATCTGATCGGTCTTGTGATCTTTTGCTTGGTACCTCCGGTTCTGAGGCTGAGGATTCTGAACCTTTTTCAAATACTCGGTCAATTTATTCTTCAAAAATCATAGCTGCACTTAAGGCGTTGCAGTCATTTAATAAGCCGAAATGCCATACTTCCCAAGAAACTTGTATGCTGAACACTTCTAAGGAAAGTACTGCTTGCAGCTCCACGTCGTCCGGTGATGTTCCCAAAAACAAAGCTTTAGTGTTTTCTCAGTGGACAGGGATGTTAGATTTACTTGAAGAGGGTCTTATAGATTCTTCAATTGAGTATAGAAGACTTGATGGAACAATGTCTGTCATCGCAAGAGATAAAGCTGTTAAGGATTTTAACACACTCCCTGAGGTAACAGTAATGATAATGTCTTTGAAGGCTGCTTGTCTTGGTCTGAACATGGTGGCAGCCTGCCGTGTTGTCATGCTAGATCTATGGTGGAATCCTACAGTTGAAGATCAAGCCATAGACAGAGCGCATCGAATTGGACAGACTCGTACGGTTAAAGTTTATCGTTTAACAGTCAAAAATACGATTGAAGACCGTATTTTAGCTTTGCAGGAAAAGAAACGAGAGATGGTTGCATCGGCGTTAGGAGAGGATGAAAGTGGTGGTCGTCTTAGTTGTCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 2256 0.4229 MAGGTRPNPLDRQYMLRALKELSQPTSEVNLPDGLLAVPLLRHQRIALSWMVQKETSSLCSSGGILADDQGLGKTVSTIALILKERPPLLETCNTAQNSVLEIVDLDDDPLPENGLMTKEFDAPQDTSRNGKAITSVNSSVHAKGRLSAGTLVVCPTSVLRQWADELANKVTWRANLSVLVYHGSNRNKDHHELAKYDVVLTTYSIVSLEVPKDDGEKESATTSKKRKCTSSSESGKKMLKDDAGPLAKVAWFRVVLDEAQSIKNYRTLVSKACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYDELETFCSKIKVPITNNPRIGYSKLQAILKIIMLRRTKDTVLDGQPIISLPPKRVKCKRVTFSQEEHDFYSKLETDSRAQFQEYADAGTVKQNYVHILSMLLRLRQACNHPQLVKGYNSTSPWTSSVETTVKIPRERQLILLKCLEACVALCGICNDVPEDAVVSVCGHIFCNQCISEHLTGEDIQCPATNCKTDLSRCSVFSEATLKNSLSDRSCDLLLGTSGSEAEDSEPFSNTRSIYSSKIIAALKALQSFNKPKCHTSQETCMLNTSKESTACSSTSSGDVPKNKALVFSQWTGMLDLLEEGLIDSSIEYRRLDGTMSVIARDKAVKDFNTLPEVTVMIMSLKAACLGLNMVAACRVVMLDLWWNPTVEDQAIDRAHRIGQTRTVKVYRLTVKNTIEDRILALQEKKREMVASALGEDESGGRLSCLTVDDLKYLFMM 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi332g00001 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 307 IPR014001 -
Vivi332g00001 751 CDD DEXDc_SHPRH-like 40 345 - -
Vivi332g00001 751 CDD SF2_C_SNF 595 703 - -
Vivi332g00001 751 Gene3D - 359 458 IPR027417 -
Vivi332g00001 751 ProSiteProfiles Zinc finger RING-type profile. 461 500 IPR001841 -
Vivi332g00001 751 SMART ultradead3 36 322 IPR014001 -
Vivi332g00001 751 SMART helicmild6 610 693 IPR001650 -
Vivi332g00001 751 Pfam Helicase conserved C-terminal domain 594 693 IPR001650 -
Vivi332g00001 751 MobiDBLite consensus disorder prediction 215 240 - -
Vivi332g00001 751 SUPERFAMILY RING/U-box 460 506 - -
Vivi332g00001 751 ProSitePatterns Zinc finger RING-type signature. 476 485 IPR017907 -
Vivi332g00001 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 459 524 IPR013083 -
Vivi332g00001 751 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 22 750 - -
Vivi332g00001 751 Gene3D - 130 358 IPR038718 -
Vivi332g00001 751 Gene3D - 11 104 IPR038718 -
Vivi332g00001 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 345 IPR027417 -
Vivi332g00001 751 Pfam Zinc finger, C3HC4 type (RING finger) 461 497 - -
Vivi332g00001 751 Pfam SNF2-related domain 55 423 IPR000330 GO:0005524|GO:0140658
Vivi332g00001 751 SMART ring_2 461 499 IPR001841 -
Vivi332g00001 751 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 222 357 - -
Vivi332g00001 751 Gene3D - 559 746 IPR027417 -
Vivi332g00001 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 571 741 IPR001650 -
Vivi332g00001 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 750 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi332g00001 18 750 RAD5 or RAD16-like Gene Family AT1G61140 59.322 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi332g00001 SNF2_N 1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi332g00001 - - vvo:131629344 1484.54