Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi325g00018 ATGGCTTATCCGCATTACCGATCGCAGTTCGGAGACACAACATTCACTAAGGTTTTTGTTGGAGGACTAGCTTGGGAAACTCCAACTGATGAAATGAGGACATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGATACGGATTTGTAACATTTCGTGATCCGGAATCAGCAAGAAGAGCTTGTGTTGATCCGAATCCGGTAATCGATGGAAGAAGAGCTAATTGTAACATTGCTTCTCTAGGACGTCCTAGACCATCACCACCAAGAGGCAGAGGTAGTACATATCAAGGTGGGGGAGTAGGAGCAGGGACAGGAGGGGCAGCGGCAGCAGTTGGGTACGGTGGTGTTCCGGCGGGAGGGGCAGCACAAATGGCAGGAGGAGGAGCAGCAGCACCAGTAATGTACCAACCATATGGCTACCCCACCTACACTCCTGAATATGGGTACCATCAAGCCACAATGTATAACCCTCAGATTCAGCAAGCACAATACTACCAACAAGTGTATGGACCATCATCTTCAACTATGGCCTCACCATATTATTATGGCTATTCTGTGCAACCAGCTGCACCAAGGAGTACATTTTCTACCCCTCAGCCACATCGCATACCAGCAGGACCATCCTATCTATACTACCCTACTACACCGATCGAAGGCGCTCCCTTCTCTCCTGCATATCGTCCATTTAATCAGCAACCAGTAATAAGGCACCCGTCTCCTTCCCCTTCTCCGACCGATTCACAGACTCAGCAACGTACTTCATCGGAGACAGCATCTGGAGTAGTTATAACTTCGGAAAGTTCAAATACTCAAGGGAAGAACAACTAA 867 0.4706 MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACVDPNPVIDGRRANCNIASLGRPRPSPPRGRGSTYQGGGVGAGTGGAAAAVGYGGVPAGGAAQMAGGGAAAPVMYQPYGYPTYTPEYGYHQATMYNPQIQQAQYYQQVYGPSSSTMASPYYYGYSVQPAAPRSTFSTPQPHRIPAGPSYLYYPTTPIEGAPFSPAYRPFNQQPVIRHPSPSPSPTDSQTQQRTSSETASGVVITSESSNTQGKNN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi325g00018 288 FunFam RNA-binding protein 24-B isoform X1 3 113 - -
Vivi325g00018 288 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vivi325g00018 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Vivi325g00018 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Vivi325g00018 288 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Vivi325g00018 288 MobiDBLite consensus disorder prediction 254 288 - -
Vivi325g00018 288 MobiDBLite consensus disorder prediction 235 288 - -
Vivi325g00018 288 PANTHER BOULE-RELATED 6 264 - -
Vivi325g00018 288 CDD RRM_RBM24_RBM38_like 16 91 - -
Vivi325g00018 288 Gene3D - 3 113 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi325g00018 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 7.92e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi325g00018 K25006 - gmx:100787086 382.489