Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi325g00008 ATGGCTGATTCACTCTCAGTTAATGTTGATTCATTACATAGCCTTGAATTAAATGCTAAGCAATCAAAATTTACTACCTATGAGGCTAAACACTTTGCATCTAGCATCCAAAAGGCTATTGCTGAATTTGTGGGTACATTTATTCTTATATTTGTTGGTTGTGGTGCTGCTCTTGTCAATGAGAGGCTGCCAATCACAGTTGTTGGCATAGCGACTGTTTCGGGCTTAGCTTTAACCGTCGCTATATATTCGGTTGGTCATGTCTCCGGTGGTCATTTCAATCCTGCTGTCACAATCGCATTAGCCGCCGTCCAAAAAATTCAGTTCAAACTTGTGCCTGTTTATGTGGTGTGTCAGTTAATGGGTGGCACACTGGCCACTCTCACTCTGAAAGTGTTGTATCATAACAAAGTGGATATTGGTGTAACACTGACCCAATATTCAAATTCAACTTCTGATCTTGAAGCATTGCTGTGGGAATCCATAATCACTTTCATATTCATGCTTACTATTTGTGGTGTTGCCACTGATCACAGAGGAATTGTTTTCTATGCAGGCCTATTACAGGAGCTTCGATGA 579 0.4076 MADSLSVNVDSLHSLELNAKQSKFTTYEAKHFASSIQKAIAEFVGTFILIFVGCGAALVNERLPITVVGIATVSGLALTVAIYSVGHVSGGHFNPAVTIALAAVQKIQFKLVPVYVVCQLMGGTLATLTLKVLYHNKVDIGVTLTQYSNSTSDLEALLWESIITFIFMLTICGVATDHRGIVFYAGLLQELR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi325g00008 192 Gene3D Glycerol uptake facilitator protein. 4 189 IPR023271 -
Vivi325g00008 192 SUPERFAMILY Aquaporin-like 33 186 IPR023271 -
Vivi325g00008 192 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi325g00008 192 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi325g00008 192 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi325g00008 192 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi325g00008 192 PANTHER AQUAPORIN NIP2-1 22 184 IPR034294 -
Vivi325g00008 192 Pfam Major intrinsic protein 34 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi325g00008 192 ProSitePatterns MIP family signature. 92 100 IPR022357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi325g00008 36 187 Major Intrinsic Protein MIP AT4G19030 46.203 5.50e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi325g00008 K09874 - gmx:100798380 267.314