Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi324g00019 ATGGATCCAAAAGTGTGTGATGAATCAGTGAAAGAAGCTTCGGATTTCAAGCCTGAGAACATTCTACAACCAGTTGATGAATCGATTGTGTGTCCCACTCCACAGAAGAAGACTGAACTATTACCCAACAAATTCAAGGACCCAATTGCCCAGCTTCCAGAAAATTACAGGGTCATTGCTGATTTGTTTAGGCATATGAGTTGTTCGCTTAGATTGCTGCATCTGCGTAAAAAGTCTCCGACTTTTCTGAATATCTGCAACAAGGTTGAAGTTCTTGCCAAAAGAAACTTCTCACTTTCTGATCTAGCGCAGATGAAGTATATACTCCCTGAAGGTATAGAAATTGAAAAGGTGGTTGTTATTGATAAGAAGAGCTTGTGTATGCAGCCGGATTTGAAGATTACATTGGTTTTTGAAGTTGTAAAAGATCACTCTGAACAGTCTGCTGATATAGCTCTTAGACAATATTTTAATTCCAGATTGATTAATTTCTTTAATCTGCACCCTCAGGTTACTAAGATTCCAGAGTCAAGACTACCAGAGCCCTTTAGCCAAGAAACTTGTAATTTGACTTTCAATATCGGGCGTGCAGATATTGCAGCAGAACCGTCATCAACTTCCAATGAAATTGTAGAGCCGCTGAAAAACTTACATTTGACAAATTTGGCAGCAGAACTTTCATCAACTTCCAATGAAATTGTAGAGCCGCTAAAAAACTTACATTTGAATGCCGCTGACCAGGCTAAGCAAGTTCAGAGCTTTTCATCATCTGAAAACTCTCTATCATCCGATGAATCTGACTCCCTAGATGACCAAGAAAGTGAAAGCACATGGCAGAAAAAATGTACACCATTGTCTGATTGTGAGGGTAATCTTAATGCAGAAAGAGGCAAGCAGAAGGAATCATTGTCAATGTCTTTTCAGGCAAATGTTGTTAATACACCGTCAGAACATAAGACATCATCTCCGCGTTCTGTTAGCCGCTGTATTTCTGAAAGCCCTGATTTGAAAATTGTCTCTTGTGCTGATAGTTTGTTGACACAGACACCTGCACTGTCAGCACCTGAGAGATTGGTGCTCGGTTCCGATGTTAAGCCTCAAAAAATGTCTGCTCAAAAGTCTATGTCATACTTTAAGCCCGCAAAAAGAGCGCTTGACTTTACACAAACAGAAGGCAATGGTGATTTGGATAATAGAGTAGACCTGTTAGAATCTAGCAAAGCTATACATGAGTTTGATTGCAACTCTAAACTTAGCAGAGGACATCCTGAGGATCGCAAATCTTTTGATTTTGTTTCCCTACCTCGGGAGGTTCAAGAGAATCTTTGTTATTCTTTTGAGAAAATCAGCCAAAACCAAATTAGTTCGGATGCATCAGATGACAATCCTCCATCATTAGTTGAACTGGTTAATGTGATTGACTCGATATTTACCTCTGTCAAAACAAATGCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATGCCGAACTGTTTAGATTTTGTTGATACTAGAGAAGCTGAAGAACAGATCGAGATTTTAGAAAAGATTGTGCCAAATTGGATTTGCAAGAAGTCACTTGCTTCTGTAGATGGAGTCACAATGTACTGCGTTAATAATGCGATAGATTTGGATTCAGTTCGATCAAGACTTCTCAGCAATGTAACCAAAGGAGACAAGTGCAAGATTTTCATTGAACGACTATGA 1707 0.3919 MDPKVCDESVKEASDFKPENILQPVDESIVCPTPQKKTELLPNKFKDPIAQLPENYRVIADLFRHMSCSLRLLHLRKKSPTFLNICNKVEVLAKRNFSLSDLAQMKYILPEGIEIEKVVVIDKKSLCMQPDLKITLVFEVVKDHSEQSADIALRQYFNSRLINFFNLHPQVTKIPESRLPEPFSQETCNLTFNIGRADIAAEPSSTSNEIVEPLKNLHLTNLAAELSSTSNEIVEPLKNLHLNAADQAKQVQSFSSSENSLSSDESDSLDDQESESTWQKKCTPLSDCEGNLNAERGKQKESLSMSFQANVVNTPSEHKTSSPRSVSRCISESPDLKIVSCADSLLTQTPALSAPERLVLGSDVKPQKMSAQKSMSYFKPAKRALDFTQTEGNGDLDNRVDLLESSKAIHEFDCNSKLSRGHPEDRKSFDFVSLPREVQENLCYSFEKISQNQISSDASDDNPPSLVELVNVIDSIFTSVKTNAITKEELLQKIMPNCLDFVDTREAEEQIEILEKIVPNWICKKSLASVDGVTMYCVNNAIDLDSVRSRLLSNVTKGDKCKIFIERL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi324g00019 568 CDD Cdt1_m 34 182 IPR014939 -
Vivi324g00019 568 Pfam DNA replication factor Cdt1 C-terminal domain 466 523 IPR032054 -
Vivi324g00019 568 SMART CDT1_2 52 181 IPR014939 -
Vivi324g00019 568 Pfam DNA replication factor CDT1 like 52 117 IPR014939 -
Vivi324g00019 568 PANTHER DNA REPLICATION FACTOR CDT1 42 552 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vivi324g00019 568 MobiDBLite consensus disorder prediction 249 282 - -
Vivi324g00019 568 Gene3D - 463 558 IPR038090 -
Vivi324g00019 568 MobiDBLite consensus disorder prediction 249 263 - -
Vivi324g00019 568 SUPERFAMILY "Winged helix" DNA-binding domain 50 183 IPR036390 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi324g00019 465 551 Core DNA Replication Machinery Family AT3G54710 39.080 8.19e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi324g00019 K10727 - gmx:102670055 501.13