Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi323g00006 ATGGCATTACTTCGACCTTCATCTTTCATAATCTTATTGGCATATGGTGCATTAATAGTTCTTGCCGCATTGACGCCATGTTGGTATGTGATGGTCACACATATCCAAAAACGCGCGAATTCGCATTCAAACAATATTGTGTCAAATCTGCAATCTGAAATTGAGTACTCAGCCGAATTGTTGCAACCATTCAAGTCATCATCAACAAATTTAGCTAGATTATTGAGTTCAACTGTTAATTCTACTAATATCACTTTCTCTGATATTAAGACTAAGGTGGCTCCATTATTATTTCAAGCATTGAAGACAATTCCTCACTTAACACAAATTTCATACATAGGAACTCAAGGTCTTTCTTTCACATACTATAATGATGATGATCAAGTTCTAGCAATGTACTCTAATTCTTCTATAGTTGATGCATCAAATAAAACCATATACTATATTCAACCAGTAAATCGTGACACCGGAGAGATTTTCGGGGAGGCCTTAATATCGAACAAGACTATCAATATCAAGTCGAGTTTGATACCCGGTACAAAAGATACTCGACACAAATTTGCATCGTTAGGAACGAAGTTGAACAATGTTAGTGAACTTTTATTCATCAACTCGGCTAGAATCAACAAAATAGGCGCGATATCTCTTGGATTTTCGGCGAAAACAATAACTGATTATGTCACTCGGGTTGTCGATCGTCAAGGGACGATATCGTATTTGGCTACCAAAGATGGAAATGTGATTGCAAAAGGGAATCAAAATATTGGTTTGAAGATTTTGAACGATAGTGTTTTATTACAATCTTTGAATGGTAATGGAGATATAATAAGAAATGAAGGAGGTGTATCTTGCAAGGATCAAGTTTATGATTCTAGTTTGAATATTCAAGATACTCAATATTTTGTTCATTGCTATCCTATTGATATTATCGGAGTAGAATCGGTGTATGTGATAGTTGTTCCGAAAAATGAAATTTTCGACTTCGATCCAAGGTATAAAAAAAAAGGATTGATACTCTTGATTGTTATGATGGTGCTGATATTTATAGCTATCTCGAGTTTCTTATTTATGAACATTGGAGTAACAAGAAGAGAAATGAATTTATGTGCATCACTCATAAAACAAATGGAAGCAACAGAACAGGCCGAGAGAAAGAATATGAACAAGAGTCTTGCTTTCGCGAGTGCTAGCCATGATCTTCGCGCTTATCTTGCAGCGCTAATCGGTTTGATTGAAATGTCTTCTAAATTAGTTCTTTCTAATACAGACAGCGATTTGAATTTGAAACCGCGTTCTGAATTGGAAACGAATTTCAAGCAAATGGATAACTGCGCGCAAGATTTGCTAGGACTATTGAATTCTATACTCGACACGAGCAAAATTGAAGCAGGAAAAATGCAACTAGAGGAAGAGGAATTTGATTTGTCGTATCTTGTTGAAGATGTGGTTGATTTGTACTATCCGATGGCGATGAAGAAAGGCGTAGAGCTTGTGTTGGACTCTTGTAATGGTTCGGTTATAAGGTATTCGCGCGTGAAAGGCGATAGGAGGAAACTGAAGCAGGTTTTGTGTAACTTGCTTAGCAATGCTGTTAAATTTACCGATGAAGGACACATAACGGTTAGAGCGTGGGCGCAGAAATCGACGTTGCAGAAGTCGATAATCAAGCGTAACCAAAATAGTGTTATTAAGCCTTTGTCTTGGATGTTTTTTAAGAAAAACGATAAAGATGTTGATGATATAGAAGCGGTGAGTTCGATTCAACAAGACGCTTGTTTGATGGATTTCGTATTTGAAGTGGATGATACGGGGAAAGGAATTTCGAAAGAGAATTATAAGTCGGTGTTCGAGAATTATGTTCAAGTTAAAGAGAATGCTGTTGGTCAAGTTGGGACTGGCTTAGGACTTGGAATTGTGCAGTCACTGGTACGTTTGATGCATGGAGACATTGAAATTGTGGAGAAAGAAGTAGGCAAAAAAGGAACATGCTTCAAGTTCAATGTGCTTCTCTCATTATGTGAAAACGACGCGGTAACTTATGGTTTAAGGGAAGGTTTTGAATATGGATCGACCTCGGGCAACAGAAACCAAACCGAGCCTTCGCATGTTATTCTTTACCTTGCGGACGAAGAAAGAAGAAGAACTTCGCAGATGTTCATCGAGAGTTTAGGGATCAAAGTTAAAGTTGTGAAGAATAGGAAACATCTCGTTGATACTCTCAAGAAGATAAAGAAACAAAATGGTCATCAAATTAGTGATCAAAGTTCTTCAGAGTCTTCGGAATTAGGTTCTCGGTGTCCGTCTTATAACTCTTCTTATAGTAGAGGTTCGACGAAAATTCCTTTGAGAGCTTTGGATGGAGCTGAATACGTATCTTCAATGTTCAAGATGACGAATAATGGAGCTGCAACGAGTTTTGTTTTGATTATCATCGATGCAAATGCGGGACCGTTTTCTAAGCTTTCTACTATTGTGACAAACTTTAAAAAAGATCTTGTCAATCCTAGTAAAGTTATTTGGTTGGAAAAGCCTTTTGAAAGTAGCGTCGATTTCAAAACGATTGATCGAGATGATGTTGTGATATCTAAACCGTTTCATGGAACTAGATTGTTTCAAGTTATAAAGTTTCTTCCCGAGTTTGGTGGGAATTTGAAAAGCAATTCTAGTAATAAAGCTTTACGAGAATTAAGATCGCAAGTATCTTCTCACGACGAAAGCGTGTATCTAAACACGAAATCTTGTAGGGAGACGAAAAGTTATATTGATCAAAGTGAAATACAAGAATGTGGTGCAAACTCAGATGATTCTAAACCTTTAAGTGGGAAGAAATTTTTGGTTATTGATGATTCTCCCATGTTGAGAAAGATTGCTATGGCTACTTTGAGTTCTCTTGGTGTTACTAGTATTGATCAATGTGAGAATGGTAAAGAGGCTTTGAAACAAGTTGAACAAGGTTTAAAAAGTGATTTTCCTAATCCTCCTTATGATTACATCTTAATGGATTGTCAGTTTCTGTCTGATACTCGTATGACACGTGTATTTTTTGAACAGATGCCGGAGATGGATGGATTTGAGGCAACAAGGAAGATAAGAGAAATGGAGAAAGAATATGGTGTGCACATTTCTATCATTGCATTATCTGCTGAAATTGATAAATTGACAACAGAGACTGGAATGGATTTTCACATAACCAAGCCTATTAAGAAAGAGCATTTACTCAAAGCTATTACATACATAGAAAATAGTGAGATATAA 3255 0.3665 MALLRPSSFIILLAYGALIVLAALTPCWYVMVTHIQKRANSHSNNIVSNLQSEIEYSAELLQPFKSSSTNLARLLSSTVNSTNITFSDIKTKVAPLLFQALKTIPHLTQISYIGTQGLSFTYYNDDDQVLAMYSNSSIVDASNKTIYYIQPVNRDTGEIFGEALISNKTINIKSSLIPGTKDTRHKFASLGTKLNNVSELLFINSARINKIGAISLGFSAKTITDYVTRVVDRQGTISYLATKDGNVIAKGNQNIGLKILNDSVLLQSLNGNGDIIRNEGGVSCKDQVYDSSLNIQDTQYFVHCYPIDIIGVESVYVIVVPKNEIFDFDPRYKKKGLILLIVMMVLIFIAISSFLFMNIGVTRREMNLCASLIKQMEATEQAERKNMNKSLAFASASHDLRAYLAALIGLIEMSSKLVLSNTDSDLNLKPRSELETNFKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSYLVEDVVDLYYPMAMKKGVELVLDSCNGSVIRYSRVKGDRRKLKQVLCNLLSNAVKFTDEGHITVRAWAQKSTLQKSIIKRNQNSVIKPLSWMFFKKNDKDVDDIEAVSSIQQDACLMDFVFEVDDTGKGISKENYKSVFENYVQVKENAVGQVGTGLGLGIVQSLVRLMHGDIEIVEKEVGKKGTCFKFNVLLSLCENDAVTYGLREGFEYGSTSGNRNQTEPSHVILYLADEERRRTSQMFIESLGIKVKVVKNRKHLVDTLKKIKKQNGHQISDQSSSESSELGSRCPSYNSSYSRGSTKIPLRALDGAEYVSSMFKMTNNGAATSFVLIIIDANAGPFSKLSTIVTNFKKDLVNPSKVIWLEKPFESSVDFKTIDRDDVVISKPFHGTRLFQVIKFLPEFGGNLKSNSSNKALRELRSQVSSHDESVYLNTKSCRETKSYIDQSEIQECGANSDDSKPLSGKKFLVIDDSPMLRKIAMATLSSLGVTSIDQCENGKEALKQVEQGLKSDFPNPPYDYILMDCQFLSDTRMTRVFFEQMPEMDGFEATRKIREMEKEYGVHISIIALSAEIDKLTTETGMDFHITKPIKKEHLLKAITYIENSEI 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi323g00006 1084 Gene3D - 921 1082 - -
Vivi323g00006 1084 Pfam Response regulator receiver domain 945 1076 IPR001789 GO:0000160
Vivi323g00006 1084 CDD REC_hyHK_CKI1_RcsC-like 944 1076 - -
Vivi323g00006 1084 Gene3D - 375 465 - -
Vivi323g00006 1084 SMART REC_2 942 1076 IPR001789 GO:0000160
Vivi323g00006 1084 CDD HisKA 386 460 IPR003661 GO:0000155|GO:0007165
Vivi323g00006 1084 ProSiteProfiles Histidine kinase domain profile. 395 672 IPR005467 -
Vivi323g00006 1084 PANTHER TWO-COMPONENT HISTIDINE KINASE 41 1077 - -
Vivi323g00006 1084 PRINTS Bacterial sensor protein C-terminal signature 630 648 IPR004358 GO:0016310|GO:0016772
Vivi323g00006 1084 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Vivi323g00006 1084 PRINTS Bacterial sensor protein C-terminal signature 614 624 IPR004358 GO:0016310|GO:0016772
Vivi323g00006 1084 ProSiteProfiles Response regulatory domain profile. 943 1080 IPR001789 GO:0000160
Vivi323g00006 1084 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 376 466 IPR036097 GO:0000155|GO:0007165
Vivi323g00006 1084 MobiDBLite consensus disorder prediction 747 776 - -
Vivi323g00006 1084 Gene3D - 466 677 IPR036890 -
Vivi323g00006 1084 SMART HKATPase_4 514 672 IPR003594 -
Vivi323g00006 1084 SUPERFAMILY CheY-like 940 1079 IPR011006 -
Vivi323g00006 1084 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 453 667 IPR036890 -
Vivi323g00006 1084 MobiDBLite consensus disorder prediction 749 776 - -
Vivi323g00006 1084 SMART HisKA_10 388 464 IPR003661 GO:0000155|GO:0007165
Vivi323g00006 1084 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 514 670 IPR003594 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi323g00006 5 1081 Histidine Kinase Gene Family AT2G47430 36.856 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi323g00006 HATPase_c 2.5e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi323g00006 - - vvo:131629190 2094.7