Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi31g00001 ATGGCATTGTGTAGTGATTTTCCCCCGATTCATTTTTTCAAGATAATAGTTTCTGAAAGTCTTGAACAAGGAAAGCTTATGATACCGATAACGTTTGTCAAGAAATATGGAGATAGTTTACCAACATCTATATTGATAAAGACTCCGAATGGTGCAGATTGGAAAATAAATTTGGTGAAAAATGATGGCAAGATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGACTATCACTCTCTATCTCATGGTCATCTTGTTGTTTTCAAATATGAAAAAGCTTCCTACTTTGAGGTAATAATCTTTGATAAGAGTGGTTTAGAGATAAAGTATCCTTTAAAAAGAGTTGAAGTCAACAAGGAAGAAAATTGTAGAGCAAGTCAAAAGAGAAAAGCTTACTCCTCCTTTGAAATTGGAAGCACTAGTTGTGTTGAAGTTGTGAAATCACAAAAGGTAGCAGCTGTATCTCATACTCACAAAAAGCACAAAGGAAAACAAGAGAATACAACACTTGAAAGAGCAAAAGAGCTCAAAACATGTAATCCATATTTTGTTCTTCTCATGGGTGCATCATACGTTGAAACCCGTTATATGTTGACCCTACCTTCTATGTTTGGCAAAACACACTTTGATATCAAAAAGAAAAAAGGAAATATTTATTTTCAGGTACCAAATAATGAAAAAGTATGGCCTGCAAGGTATGGAATTAGGACGTCCTCCACAGGACTAAGATTTGAACTCTTTTGTGGATGGAAGAAATTCTCAACGGACAATGATTTGAAAGTCGGTGATGTTTGCAACTTTGAGCTCGTTCTTAAAACTAATATGACTTTTCTAGTTCACATATTTAGAAAGACGAATCAAGTCAGCACAGATAGTTTGCAAATTCTTTCCAAATCAAAAGAGAAGCTGCTAAAGGATAGATAG 924 0.3452 MALCSDFPPIHFFKIIVSESLEQGKLMIPITFVKKYGDSLPTSILIKTPNGADWKINLVKNDGKIWFEKGWKEFADYHSLSHGHLVVFKYEKASYFEVIIFDKSGLEIKYPLKRVEVNKEENCRASQKRKAYSSFEIGSTSCVEVVKSQKVAAVSHTHKKHKGKQENTTLERAKELKTCNPYFVLLMGASYVETRYMLTLPSMFGKTHFDIKKKKGNIYFQVPNNEKVWPARYGIRTSSTGLRFELFCGWKKFSTDNDLKVGDVCNFELVLKTNMTFLVHIFRKTNQVSTDSLQILSKSKEKLLKDR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi31g00001 307 SUPERFAMILY DNA-binding pseudobarrel domain 7 105 IPR015300 -
Vivi31g00001 307 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Vivi31g00001 307 SMART B3_2 183 285 IPR003340 GO:0003677
Vivi31g00001 307 SMART B3_2 12 104 IPR003340 GO:0003677
Vivi31g00001 307 CDD B3_DNA 181 283 IPR003340 GO:0003677
Vivi31g00001 307 Gene3D - 6 105 IPR015300 -
Vivi31g00001 307 PANTHER B3 DOMAIN-CONTAINING 8 280 - -
Vivi31g00001 307 Pfam B3 DNA binding domain 12 103 IPR003340 GO:0003677
Vivi31g00001 307 Pfam B3 DNA binding domain 183 284 IPR003340 GO:0003677
Vivi31g00001 307 Gene3D - 162 287 IPR015300 -
Vivi31g00001 307 SUPERFAMILY DNA-binding pseudobarrel domain 177 285 IPR015300 -
Vivi31g00001 307 CDD B3_DNA 11 102 IPR003340 GO:0003677
Vivi31g00001 307 ProSiteProfiles B3 DNA-binding domain profile. 183 285 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi31g00001 8 283 B3 DNA Binding Superfamily AT3G18990 25.364 4.95e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi31g00001 B3 1.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi31g00001 - - vvo:131611564 400.979