Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi319g00027 ATGATGGCATTCAGAAAATGTTCTTCAAACTCGTGTAATTGGGTACCTGTAATTTTGTCTGAAACGGAATACTGCCCAGAAGCTGTTCGACAATATGCACTTACTTCTCACAACAGGAAGACTTTGAAGGAGAGAGTATGGAAGCATCTTGTATATCTTGGATGGCAAATTCACCAAGATGGTGATCATTTCAGGTACAAGCCACCCCATGGAATCTTGTGTCACAAGAAATTTTACTACTCGCTTATTGAGATTTGTAAAGCTATCCAAATGGAATCTGTGGTGAACTCTTCTTCTGTTGCAATGGCACATTGTCCTCAAGCCATTGTTGAATACCACAAACATGCACTTGACCCGAATTCGCGTGATAAAGGGAAACTTATTTCGAAAATAAGAAATTATCTCGTGAACGAAGGATGGGTTTTGACTTACCCGCCACCAGGAAACAAAAGAAGCGGTGTGTTATATACTTCTCCGCAAAAACGGAAATTTAGCTCACTCAACATGGTATGCAAATTCCTAATTGAGGAAAGTGTTAGAAGTTCTTCTATTTCTGGTAATCAACCTTTAAATGCCTCCTCGGTTGTTAACGAAGAAAGTGTTGATCAGGAAAGTATTCGAAAGTCACCTATGTATGGCATTCAACCTTTTGTTAGTGATGAAAGTGTTGATTGGGTACCAAGTGATGATGACTTATCAAGTAAAGCTCCAAACTTGCTTCCTCGTGAGAGCGAGTTATACACTGTAGACAGGGTTGCTACAAATAGATCAAGGCGAAAACGCGATGAATCAAGATCTCTAGCTGCGGTGCCTTCTCCTGTTGCAGTGGCGGGTGAACAAGCTACTTCTTCTGTGGCGTATTGTCGTCAAGCCGTTGTTGAATATCATAAACATGCACTCGACCCGAATTGGGGTGATAAAAGTGAACTTATTTCGAAAATAAGAGAGCATCTCGTGAAAGAAGGATGGGTTTTAACTGACCCGCCGCTAGAAAAAAGAAGAAAGGGTGTGTTATATACTTCTCCGCAAAAACGGAAATTTTTCTCACTCAACACGGTATGCAAATTCCTAATTGAGGAAAGTGATAGAAGAACGTCTATATTTGGCATTCAACCTTTAAATGCCTCCTCAGTTGTTAACGAAGAAGGTTTTGATCAGGAAAGTATTCGAAAATCACCTATGTATGGCATTCAAGCTTTTAGTAGTGATGAAAGTGTTGATCGGGTACCAAGTGATGATGACTTATCAAGTAAAGACAGGGTTGCTACAAATAGATCAAAGCGAAAACGCACTGAATCAAGTCTAAGAGTGAGATCAAATAAAAGAGTGCAGAATGTTTCTGTCCCTTCTCTATCACATCGTAAAGCTCTGAATGTTGTGTCTTGGTTGATAGACAGCAACGTGGTGTTACCAAGGTCTAATGTTTGTTATGTAGCAACAATACAGGGTGTCATGGCTTCTGGTCAAATAACTCACGATGGAATCAAGTGTAAATGTTGTCATAAAATATACAGTCTTGTTTCTTTCGAATTTCATGCTATTGGCAGTAATACCACCAGACCAAGTGCTAGTATCTTTCTGGATGATGGTAGGTCACTCTTACAGTGCCAGGTACAAATAATGCGAGATCATGTGTCAAGGGAGGCTATGGTTAAATCACAGAGTGATTTGTGTCAGAGTGAAAACGACTACATTTGTTCCATTTGCCGCAACGAGGGTGAACTTCTTTTGTGTGATCGGTGTCCGTCTTCTTATCATAAGACGTGTCTTGGTCTGGAGGACGTCCCTGACGGTGATTGGTTTTGTCCATCATGTCTTTGCGGGATTTGTGGCCAAAGAAAATTCAATGGGGGCAGTGAGGATGGACATTTCCTTAAATGCATTCAGTGTGAACATAAATATCATGTTGCATGCCTGATAAGTAGAGATACAAGTCAGTCCAGAAGTTATGTGGAAAGCCAGTTCTGCGGAAAAGACTGTGAAACGTTATATGAAGGCCTTCAAAGAATGCTGAGAGAGCCAGTTTCAGTGGGTGTGGACGATCTAACATGGACATTGGTGAAGTATATCGACTCCGAGAGTTGTGATACTGATAGTGGTAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTCTTTCTGTGATGCATGAATGTTTTGAGCCCCAAAAGGAACCCTCCTCTGGCAGAGATCTGGTGGAAGATGTTATATTCAGCCGATGGTCAGAACTTAATCGAATGAATTTCCAGGGTTTCTATACTGTACTTCTAGAGAAAGATGAAGAGCTGGTCAGTGTGGCAATTATTAGGGTCTTTGGAGATAAGGTGGCTGAAGTACCTCTCGTTGGTACCAGATTTCAATATCGTCGACAGGGAATGTGCCACATCTTAATGGATGAACTGGAAAAGGTGGTGCACAGTCATACTTATATGGAAGTTCAACACAGTTTATGTTAA 2466 0.4088 MMAFRKCSSNSCNWVPVILSETEYCPEAVRQYALTSHNRKTLKERVWKHLVYLGWQIHQDGDHFRYKPPHGILCHKKFYYSLIEICKAIQMESVVNSSSVAMAHCPQAIVEYHKHALDPNSRDKGKLISKIRNYLVNEGWVLTYPPPGNKRSGVLYTSPQKRKFSSLNMVCKFLIEESVRSSSISGNQPLNASSVVNEESVDQESIRKSPMYGIQPFVSDESVDWVPSDDDLSSKAPNLLPRESELYTVDRVATNRSRRKRDESRSLAAVPSPVAVAGEQATSSVAYCRQAVVEYHKHALDPNWGDKSELISKIREHLVKEGWVLTDPPLEKRRKGVLYTSPQKRKFFSLNTVCKFLIEESDRRTSIFGIQPLNASSVVNEEGFDQESIRKSPMYGIQAFSSDESVDRVPSDDDLSSKDRVATNRSKRKRTESSLRVRSNKRVQNVSVPSLSHRKALNVVSWLIDSNVVLPRSNVCYVATIQGVMASGQITHDGIKCKCCHKIYSLVSFEFHAIGSNTTRPSASIFLDDGRSLLQCQVQIMRDHVSREAMVKSQSDLCQSENDYICSICRNEGELLLCDRCPSSYHKTCLGLEDVPDGDWFCPSCLCGICGQRKFNGGSEDGHFLKCIQCEHKYHVACLISRDTSQSRSYVESQFCGKDCETLYEGLQRMLREPVSVGVDDLTWTLVKYIDSESCDTDSGKSGLLAESYSKLNVALSVMHECFEPQKEPSSGRDLVEDVIFSRWSELNRMNFQGFYTVLLEKDEELVSVAIIRVFGDKVAEVPLVGTRFQYRRQGMCHILMDELEKVVHSHTYMEVQHSLC 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi319g00027 821 PANTHER PHD FINGER PROTEIN 12 285 810 IPR042163 GO:0003714|GO:0045892
Vivi319g00027 821 MobiDBLite consensus disorder prediction 406 430 - -
Vivi319g00027 821 ProSiteProfiles Zinc finger PHD-type profile. 563 608 IPR019787 -
Vivi319g00027 821 SMART PHD_3 565 606 IPR001965 -
Vivi319g00027 821 SMART PHD_3 607 661 IPR001965 -
Vivi319g00027 821 Pfam PHD-finger 565 607 IPR019787 -
Vivi319g00027 821 MobiDBLite consensus disorder prediction 402 439 - -
Vivi319g00027 821 SUPERFAMILY FYVE/PHD zinc finger 545 606 IPR011011 -
Vivi319g00027 821 SMART ring_2 566 605 IPR001841 -
Vivi319g00027 821 SMART ring_2 607 656 IPR001841 -
Vivi319g00027 821 Pfam Tify domain binding domain 488 539 IPR032308 -
Vivi319g00027 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 617 IPR013083 -
Vivi319g00027 821 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 741 811 IPR016181 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi319g00027 290 807 PHD Transcription Factor Family AT5G58610 37.417 7.25e-115 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi319g00027 TDBD 4e-19 No_clan