Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi319g00004 ATGCCGGAGATCGAACACGCGCCGGAAGTTACCGCCCTTTTTGGAAAATACGAATTGGGAAGAGTCGTGGGTTGCGGCGCGTTCGCCAAAGTTCACTACGCGCGCAATATTCAAACGGGACATGGCGTAGCCGTCAAGATAATCAACAAGAAGAAACTCTCCGGCACCGGTCTCACCGGAAACGTGAAACGCGAAATCACCATCATGAGTCGTCTTCATCACCCTCACATTGTTCGTCTCCACGAAGTTTTAGCGACGAAAACGAAAATCTACTTCATCATGGATTTCGTTCGCGGTGGTGAGCTTTTCGCGAAGATCTCAAAGGGGAGATTCAGTGAGGATCTTAGCCGTCGGTATTTTCATCAGTTAATCTCCGCCGTTGGATATTGTCACTCGCGTGGAGTTTTTCATCGTGATCTTAAACCGGAGAATCTATTATTAGACGAGAATGGGAAATTAAAGGTTTCGGATTTCGGGTTAAGTGCGGTTACGGATCAGATCCGACCCGATGGGTTGCTTCATACGCTTTGTGGGACACCTGCTTACGTGGCGCCGGAGATTCTCGCTAAGAGAGGATACGATGGGGCTAAGGTTGATGTTTGGTCGTGTGGGGTTGTTTTGTTTGTTCTTGCTGCTGGGTATCTTCCGTTTAACGATCAGAATTTAATGGTTATGTATCGGAAAATCTATAAAGGTGAATTCCGGTGTCCGCGGTGGATGTCGCCGGATCTGCGGCGGTTTTTGTCGAAGTTACTTGATACGAACCCGGAAACCCGGATCACCGTGGAGGAAATGACCCGGGATCCGTGGTTTAGAAAAGGGTATAAAGAGATAAGGTTTCATGAGGACGATTATGGGTCTGATCACGGGCATGGAGTTGGAATCGGGTGTAAGGGTGATGGGTCGGAGGTGATGAATTTGAACGCTTTTGATATCATATCGCTTTCTTCGGGTTTGGATTTATCCGGGTTGTTTGGGGAGTTTGATGGGGCGGAGAGGTTTGTTTTAAGGGAGTCGCCGGAGAGGATAATTGAGGTGGTGGAGGAAGTTGGAGCGGCGGAGGGAATGGGGGTGAGGTGGAAGAAGGAATGTGGGGTTGAGTTGGAAGGGTTGAATGGTAATTTCGGAATTGAGATTGAGGTTTACCGGTTGACGGCGGAGGTGGCGATGGTTGAGGTAAGGAGGAGAGGAAGTGATGCGGCGGCGTTTAGTGATTTGTGGGATGTTAAGCTTAAGCCTCAGTTGGTTTCAGGTGGTGCAACGACGTCGTATCAGCATGAATGTGAACCTGAATCACAACCTGAATCACAAACTGAATCACCGGTTGCCAGTGACTGA 1338 0.4895 MPEIEHAPEVTALFGKYELGRVVGCGAFAKVHYARNIQTGHGVAVKIINKKKLSGTGLTGNVKREITIMSRLHHPHIVRLHEVLATKTKIYFIMDFVRGGELFAKISKGRFSEDLSRRYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGKLKVSDFGLSAVTDQIRPDGLLHTLCGTPAYVAPEILAKRGYDGAKVDVWSCGVVLFVLAAGYLPFNDQNLMVMYRKIYKGEFRCPRWMSPDLRRFLSKLLDTNPETRITVEEMTRDPWFRKGYKEIRFHEDDYGSDHGHGVGIGCKGDGSEVMNLNAFDIISLSSGLDLSGLFGEFDGAERFVLRESPERIIEVVEEVGAAEGMGVRWKKECGVELEGLNGNFGIEIEVYRLTAEVAMVEVRRRGSDAAAFSDLWDVKLKPQLVSGGATTSYQHECEPESQPESQTESPVASD 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi319g00004 445 Gene3D Transferase(Phosphotransferase) domain 1 8 289 - -
Vivi319g00004 445 SUPERFAMILY Protein kinase-like (PK-like) 14 279 IPR011009 -
Vivi319g00004 445 Pfam NAF domain 306 359 IPR004041 GO:0007165
Vivi319g00004 445 Gene3D Kinase associated domain 1, KA1 303 417 - -
Vivi319g00004 445 CDD CIPK_C 308 415 - -
Vivi319g00004 445 FunFam Non-specific serine/threonine protein kinase 7 295 - -
Vivi319g00004 445 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi319g00004 445 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi319g00004 445 MobiDBLite consensus disorder prediction 420 445 - -
Vivi319g00004 445 FunFam Aurora kinase A 10 100 - -
Vivi319g00004 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Vivi319g00004 445 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 399 - -
Vivi319g00004 445 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Vivi319g00004 445 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi319g00004 445 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi319g00004 1 423 CBL-interacting serine-threonine protein kinases AT2G30360 62.615 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi319g00004 Pkinase 7.4e-70 CL0016