Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi318g00022 ATGGAGGTTTTATTGTTAGGGTTAAAGGGTTGTTTTTTCCTCTTGATTTTGTGTTTGTGGATTTCAAAGGAAGTTGTGGGAAGTACCATTGGAAACTCTAGTGTTTCTTCTAGACCTAAAGTACTGAAAATTGGAGCATTGTTTACTGTTGATTCTGTGATTGGGAAATCAGCTCAAGCAGGAATCATGGCTGCAATTGAAGATGTTAATGCTAATAGCACCGTTCTTTCGGGTTTTAATCTCGAAGTTATTTACAAGGATACAAATTGCAGTGGATTTCTTGGAACAGTTGAAGCTTTGCAGTTGATGGAGAATGAAGTGTTTGCGGCGATTGGTCCACAATCTTCGGGGATAGCTCATATAATCTCTCATGTTGTTAATGAACTTCATGTACCGCTTCTTTCGTTCGGAGCAACGGACCCGACTTTGTCCTCTCTGCAGTATCCGTATTTCGTTAGGACCACTCATAGCGACTATTTTCAGATGTATGCGGTTGCTGACCTTGTTGATTTTTATAGATGGAGGCAAGTGATTGCCATTTTTGTAGATGATGATAATGGGAGAAACGGCGTTGCAGTACTCGGAGATGCGCTGGCGAAGAAACGCGGGAAGATATCTTATAAAGCCGCGTTATCTCCTGGAGCGAGCGACAGTAATATTAGTGACTTGTTGAATGGTGTAAATTTGATGGAGTCAAGAGTCTTTGTTCTTCATGTTAATCCTGATACTGGTTTGGCTATTTTTGATGTTGCTAAGAATCTTGGAATGATGAAAAGTGGTTATGTGTGGATTGCGACGGATTGGCTTCCTTCGAAGTTGGATTCGATGGAAACGGTTGATGCCGATAAGTTGAATCTCCTTCAAGGTGTTGTAGCTCTGAGGCATCACACTCCGGATACTAATCTGAAAAAGAGTTTTTTCTCGAGGTTGAAGAACACGAAAGGCATGGAAACTGAGAGGTTCAACTCTTATTCTTTATATGCATATGATTCTGTTTGGTTAGCAGCTCATGCTCTTGATGCATTTCTCAAACAAGGTGGAAACATATCTTTCTCATCTGACCCCAAGTTGGTTGACACCAATGGAAGCATGTTACATTTGTCGTCGCTTCGAGTTTTCGACGGAGGCCCTTCGTTTCTCCCTACGCTTTTGAGAACGAACTTCACCGGTTTGAGTGGTCAGATTCAATTTGATTCGGATAATAATCTAATTCAACCATCGTATGATATCCTTAACATCGGAGAGTCAGGTTTGCGAAGAGTCGGTTATTGGTCTAATTACTCCGGTCTATCGGTTTTAGCTCCGGAAATTTTGTACACGAGACCGCCTAACACGTCATCAAGCAATCAAAAACTGTTAAATGTTTTGTGGCCTGGGGAAACTATAAATACCCCAAAAGGATGGGTTTTCCCTAACAATGGAGAGCCACTGAAAATAGCAGTGCCTCATAGAGTAAGCTACTTGGGTTTTGTTTCTAAAGATAAGAATCCACCTGGAGTTAAAGGCTATTGCATTGACGTCTTTGAAGCAGCCATAAACTTGTTGCCGTATCCTGTTCCGCGAAAGTATATACTATACGGAGATGGTAATCGAAATCCCGACTATAGCCAGCTTGTCAATGAGGTTGCACTAAATACCTATGATGCAGCTGTTGGAGATGTTACAATTGTCCCGAACAGGACTAGAATTTTGGATTTCACTCAACCATTCATGGAATCAGGTCTGGTAGTTGTTGTTCCTGTCAAGGAGATTAAATCAAGTCCTTGGGCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACCGGCGCCTTTTTTCTTTTTGTCGGAGCTGTTGTATGGATTCTCGAGCACAGGCACAATCCCGAGTTCCGAGGTCCACCCAAGAAACAAATTATGACAATATTTTGGTTTACTTTCTCAACAATGTTTTTCTCGCACAGAGAGAACACTGTGAGTGGTCTTGGGAGATTCGTGCTAATCATATGGCTTTTCGTGGTTCTAATTATCAATTCAAGCTACACAGCAAGCTTAACGTCGATCCTCACGGTGCAGCAACTGTCGTCACAAATTGAAGGAATTGAAAGCTTGATATCAGGTACTCAACCGATTGGAATTCAAGACGGATCATTCGCAAAGAGGTATCTGATAGATGAACTCAATATACAACCATCTAGGATAATTTCATTGAGAGATCCAAAAGCGTATGGAGACGCCCTTACGCGTGGACCAAAAGCAGGAGGGGTTATGGCTATCGTCGACGAGCTTCCATATATTGAACTCTTTATGTCTAGTACAAATTGCAAATTCAGAACTGTTGGACAGGAGTTCACTAAAAGTGGTTGGGGATTCGGATTCCAAAGGGACTCTCCCCTTGCTATTGATATGTCAACTGCGATTCTCCAACTCTCGGAGAACGGTGACTTGCAAAAGATTCACGACAAATGGATTTCAAGACATGATTGTGCTGCAAAAGTCAACGACGACGTTGATTCAAACGAACTATCTCTAAGTAGCTTCTGGGGCCTCTTTCTTATATGCGGCATTGCATGTTTCCTTTCTTTGATCGCGTTCTTTGTTAGAGTGTTTTGTCAATACATGAAATTCATCCCAGAGGACGAGGAAGTTGATCCGGAAAATCCATCTAACAGTCCTAGCAAAAAATTTCGACCTTCGAAAAGCTTCAGAGACTTGATTGTATTTGTGGATAAGAGAGAAAGGGAAATCAAGGAGATACTTAGACAGAAGAGTAAGAAAAGGCGGCGCGGTGAGAGTTTAGATGATCAATCAAGTACACAATCACCTATGGACGCGGCGGGAGTTTAG 2829 0.4192 MEVLLLGLKGCFFLLILCLWISKEVVGSTIGNSSVSSRPKVLKIGALFTVDSVIGKSAQAGIMAAIEDVNANSTVLSGFNLEVIYKDTNCSGFLGTVEALQLMENEVFAAIGPQSSGIAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFVRTTHSDYFQMYAVADLVDFYRWRQVIAIFVDDDNGRNGVAVLGDALAKKRGKISYKAALSPGASDSNISDLLNGVNLMESRVFVLHVNPDTGLAIFDVAKNLGMMKSGYVWIATDWLPSKLDSMETVDADKLNLLQGVVALRHHTPDTNLKKSFFSRLKNTKGMETERFNSYSLYAYDSVWLAAHALDAFLKQGGNISFSSDPKLVDTNGSMLHLSSLRVFDGGPSFLPTLLRTNFTGLSGQIQFDSDNNLIQPSYDILNIGESGLRRVGYWSNYSGLSVLAPEILYTRPPNTSSSNQKLLNVLWPGETINTPKGWVFPNNGEPLKIAVPHRVSYLGFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPRKYILYGDGNRNPDYSQLVNEVALNTYDAAVGDVTIVPNRTRILDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPKKQIMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIESLISGTQPIGIQDGSFAKRYLIDELNIQPSRIISLRDPKAYGDALTRGPKAGGVMAIVDELPYIELFMSSTNCKFRTVGQEFTKSGWGFGFQRDSPLAIDMSTAILQLSENGDLQKIHDKWISRHDCAAKVNDDVDSNELSLSSFWGLFLICGIACFLSLIAFFVRVFCQYMKFIPEDEEVDPENPSNSPSKKFRPSKSFRDLIVFVDKREREIKEILRQKSKKRRRGESLDDQSSTQSPMDAAGV 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi318g00022 942 FunFam Glutamate receptor 157 344 - -
Vivi318g00022 942 CDD PBP1_GABAb_receptor_plant 43 432 IPR044440 -
Vivi318g00022 942 MobiDBLite consensus disorder prediction 914 928 - -
Vivi318g00022 942 Pfam Receptor family ligand binding region 62 413 IPR001828 -
Vivi318g00022 942 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 55 71 - -
Vivi318g00022 942 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 115 143 - -
Vivi318g00022 942 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Vivi318g00022 942 SUPERFAMILY Periplasmic binding protein-like II 452 818 - -
Vivi318g00022 942 Gene3D - 63 405 - -
Vivi318g00022 942 Coils Coil 903 923 - -
Vivi318g00022 942 Gene3D - 589 709 - -
Vivi318g00022 942 Gene3D - 157 430 - -
Vivi318g00022 942 SMART GluR_14 478 820 IPR001320 GO:0015276|GO:0016020
Vivi318g00022 942 SUPERFAMILY Periplasmic binding protein-like I 37 468 IPR028082 -
Vivi318g00022 942 Gene3D - 763 825 - -
Vivi318g00022 942 CDD GluR_Plant 476 818 - -
Vivi318g00022 942 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 887 IPR015683 -
Vivi318g00022 942 Gene3D - 472 588 - -
Vivi318g00022 942 FunFam Glutamate receptor 472 588 - -
Vivi318g00022 942 FunFam Glutamate receptor 714 822 - -
Vivi318g00022 942 Pfam Ligand-gated ion channel 819 852 IPR001320 GO:0015276|GO:0016020
Vivi318g00022 942 MobiDBLite consensus disorder prediction 914 942 - -
Vivi318g00022 942 FunFam Glutamate receptor 588 718 - -
Vivi318g00022 942 Pfam Bacterial extracellular solute-binding proteins, family 3 532 818 IPR001638 -
Vivi318g00022 942 PIRSF IGluLR_plant 8 941 IPR017103 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi318g00022 38 789 Ion Channels AT1G05200 67.593 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi318g00022 K05387 - gmx:100783715 1422.91