Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi318g00019 ATGTTCCAGCCAAACCTAATGGAAGCTGGACAACTTCATCATCATCAGCTTCTTCCACTCGACATGACGCAGAACAACAACACTTCGGAAAGCGACGTTCCGAGAATCCGTGAGGATGAATTCTTTGACAGTGCTACAAAATCTGGTAACAGTGAGAATCAAGAAGCGGTTAATTCTGGTGGCGAAGATCAAGAGCCTCGTGCTAAGAAAAAACGTTACCATCGTCATACACAGCACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAATGTCCACATCCTGATGATAAGCAAAGGAAGGAACTGAGTAGAGAGTTAGGGCTAGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAACGTACTCAAATGAAGACTCAACAAGAGAGGCATGAGAATACTGCGCTTCGAACTGAGAATGAGAAGCTTCGTGCCGATAACATGAGGTTTCGAGAAGCTCTTAGTAATGCTTCTTGTCCTAATTGCGGTGGACCGACGGCTATTGGAGAGATGTCGTTTGATGAGCATCATCTGAGGCTCGAAAATGCTCGACTAAGAGAAGAGATTGATAGGATATCTGCCATAGCCGCAAAGTACGTAGGCAAACCGGTGGTGAGTTATCCACTACTCTCTCCTTCATCTGGTCCTCCCCGTCCTCTAGAACTCGGCATTGGTGGTTTTGGAGGACAACCAGGACTGAGTGGAGGAGACATGTACGGAGCTGGAGATCTTCTTAGATCGATAAGTGGACCGACAGAAGCCGATAAGCCGATGATAATTGAGCTAGCTGTTGCTGCTATGGAGGAACTCATTGGAATGGCTCAAATGGGTGATCCTCTTTGGTTAACTACACTTGAAGGCGCTTCCATACTCAATGAGGAGGAGTATGTTCGGTCTTTTCCTCGAGGAATTGGTCCAAAACCTGCTGGTTTTAAATGCGAAGCTTCGAGAGAAACTTCTGTTGTCATCATGAATCATGTTAACCTCGTCGAGATCCTCATGGACGTGAACCAATGGTCCACAGTTTTTTCTGGCATTGTTTCAAGAGCAATGACATTGGAAGTGCTCTCAACTGGAGTAGCAGGGAACTACAATGGTGCATTACAAGTGATGACAGCTGAACTACAAGTACCTTCACCACTTGTGCCAACAAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAGCATGCTGATGGAACTTGGGCAGTTGTCGACGTTTCGTTGGACAATTTGCGCCCAAGTCCTTCTTCAAGATCTCGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCTAATGGCTACTCGAAGGTTATATGGGTTGAGCATGTAGAAGTGGATGAAAGAGGTGTTCATAATCTATACAAGCAACTCGTTAGCTCCGGGCACGCATTTGGCGCGAAGCGTTGGATCGCAACATTAGATCGACAATGTGAAAGACTTGCTAGCGCGATGGCGACAAACATTCCCACAGTCGATGTTGGCGTGATAACAAACCAAGATGGGAGAAAGAGCATGTTGAAACTAGCTGAAAGAATGTGCATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACTGCTCACACATGGACAACACTTTCCGGTACCGGAGCCGATGATGTCCGTGTCATGACCCGTAAGAGCGTGGACGATCCAGGAAGACCGGCCGGCATTGTTCTTAGTGCCGCAACTTCTTTTTGGCTTCCAGTTTCACCAAAAAGAGTTTTTGAATTTCTGAGAGATGAAAACTCAAGAAGTGAGTGGGATATTCTTTCTAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCTAATGGAAGAGACACTGGAAACTGCGTATCGCTACTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCACAGACACAACAGGATCATTTGTGATATATGCACCTGTGGACATAGTTGCAATGAATGTGGTTCTAAATGGAGGTGATCCTGATTATGTTGCGCTTCTTCCATCTGGATTCGCTATATTACCGGACGGAACAACTAATGGTGGAAATGGTGGTGGTGAAAGTGGTCATGGTGGCGGTGGTGGTGGTTCTCTATTGACTGTTGCATTTCAAATATTGGTTGATTCTGTTCCAACAGCAAAACTTTCTCTAGGATCTGTTGCTACCGTTAATAATCTCATTGCTTGTACCGTTGAGAGGATTAAGGCTTCGTTGTCCGGTGAAGTTGCTTGA 2232 0.4494 MFQPNLMEAGQLHHHQLLPLDMTQNNNTSESDVPRIREDEFFDSATKSGNSENQEAVNSGGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTALRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSGPPRPLELGIGGFGGQPGLSGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLTTLEGASILNEEEYVRSFPRGIGPKPAGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSSRSRRRPSGCLIQEMPNGYSKVIWVEHVEVDERGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTNGGNGGGESGHGGGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi318g00019 743 Gene3D - 55 143 - -
Vivi318g00019 743 Gene3D - 307 477 IPR023393 -
Vivi318g00019 743 SMART START_1 261 480 IPR002913 GO:0008289
Vivi318g00019 743 SUPERFAMILY Bet v1-like 500 735 - -
Vivi318g00019 743 Pfam START domain 262 480 IPR002913 GO:0008289
Vivi318g00019 743 FunFam Homeobox-leucine zipper protein GLABRA 2 261 479 - -
Vivi318g00019 743 ProSiteProfiles START domain profile. 252 483 IPR002913 GO:0008289
Vivi318g00019 743 SUPERFAMILY Homeodomain-like 58 128 IPR009057 -
Vivi318g00019 743 Pfam Homeodomain 70 125 IPR001356 GO:0003677
Vivi318g00019 743 SMART HOX_1 68 131 IPR001356 GO:0003677
Vivi318g00019 743 MobiDBLite consensus disorder prediction 46 60 - -
Vivi318g00019 743 SUPERFAMILY Bet v1-like 252 482 - -
Vivi318g00019 743 CDD START_ArGLABRA2_like 256 479 - -
Vivi318g00019 743 MobiDBLite consensus disorder prediction 17 79 - -
Vivi318g00019 743 CDD homeodomain 70 128 IPR001356 GO:0003677
Vivi318g00019 743 Coils Coil 126 153 - -
Vivi318g00019 743 FunFam Homeobox-leucine zipper protein HDG1 56 143 - -
Vivi318g00019 743 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Vivi318g00019 743 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 738 IPR042160 -
Vivi318g00019 743 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi318g00019 1 743 Homeobox Transcription Factor Family AT1G05230 76.707 0.0 1136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi318g00019 START 2.9e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi318g00019 K09338 - gmx:100809556 1275