Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi318g00018 ATGCAAAGTAGTTTAATGATTCCAACCATAAACATGCCTTCTATGATAGAAAAAAACAACAACAACAACGTTGGTGTCTTTGAATTATCTTCTTCTCTTTCTCTTGCCCAGCCAAACCTAATGGAAGCTGGACAACTTCATCATCATCAGCTTCTTCCACTCGACATGACGCAGAACAACAACACTTCGGAAAGCGACGTTCCGAGAATCCGTGAGGATGAATTCTTTGACAGTGCTACAAAATCTGGTAACAGTGAGAATCAAGAAGCGGTTAATTCTGGTGGCGAAGATCAAGAGCCTCGTGCTAAGAAAAAACGTTACCATCGTCATACACAGCACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAATGTCCACATCCTGATGATAAGCAAAGGAAGGAACTGAGTAGAGAGTTAGGGCTAGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAACGTACTCAAATGAAGACTCAACAAGAGAGGCATGAGAATACTGCGCTTCGAACTGAGAATGAGAAGCTTCGTGCCGATAACATGAGGTTTCGAGAAGCTCTTAGTAATGCTTCTTGTCCTAATTGCGGTGGACCGACGGCTATTGGAGAGATGTCGTTTGATGAGCATCATCTGAGGCTCGAAAATGCTCGACTAAGAGAAGAGATTGATAGGATATCTGCCATAGCCGCAAAGTACGTAGGCAAACCGGTGGTGAGTTATCCACTACTCTCTCCTTCATCTGGTCCTCCCCGTCCTCTAGAACTCGGCATTGGTGGTTTTGGAGGACAACCAGGACTGAGTGGAGGAGACATGTACGGAGCTGGAGATCTTCTTAGATCGATAAGTGGACCGACAGAAGCCGATAAGCCGATGATAATTGAGCTAGCTGTTGCTGCTATGGAGGAACTCATTGGAATGGCTCAAATGGGTGATCCTCTTTGGTTAACTACACTTGAAGGCGCTTCCATACTCAATGAGGAGGAGTATGTTCGGTCTTTTCCTCGAGGAATTGGTCCAAAACCTGCTGGTTTTAAATGCGAAGCTTCGAGAGAAACTTCTGTTGTCATCATGAATCATGTTAACCTCGTCGAGATCCTCATGGACGTGAACCAATGGTCCACAGTTTTTTCTGGCATTGTTTCAAGAGCAATGACATTGGAAGTGCTCTCAACTGGAGTAGCAGGGAACTACAATGGTGCATTACAAGTGATGACAGCTGAACTACAAGTACCTTCACCACTTGTGCCAACAAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAGCATGCTGATGGAACTTGGGCAGTTGTCGACGTTTCGTTGGACAATTTGCGCCCAAGTCCTTCTTCAAGATCTCGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCTAATGGCTACTCGAAGGTTATATGGGTTGAGCATGTAGAAGTGGATGAAAGAGGTGTTCATAATCTATACAAGCAACTCGTTAGCTCCGGGCACGCATTTGGCGCGAAGCGTTGGATCGCAACATTAGATCGACAATGTGAAAGACTTGCTAGCGCGATGGCGACAAACATTCCCACAGTCGATGTTGGCGTGATAACAAACCAAGATGGGAGAAAGAGCATGTTGAAACTAGCTGAAAGAATGTGCATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACTGCTCACACATGGACAACACTTTCCGGTACCGGAGCCGATGATGTCCGTGTCATGACCCGTAAGAGCGTGGACGATCCAGGAAGACCGGCCGGCATTGTTCTTAGTGCCGCAACTTCTTTTTGGCTTCCAGTTTCACCAAAAAGAGTTTTTGAATTTCTGAGAGATGAAAACTCAAGAAGTGAGTGGGATATTCTTTCTAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCTAATGGAAGAGACACTGGAAACTGCGTATCGCTACTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCACAGACACAACAGGATCATTTGTGATATATGCACCTGTGGACATAGTTGCAATGAATGTGGTTCTAAATGGAGGTGATCCTGATTATGTTGCGCTTCTTCCATCTGGATTCGCTATATTACCGGACGGAACAACTAATGGTGGAAATGGTGGTGGTGAAAGTGGTCATGGTGGCGGTGGTGGTGGTTCTCTATTGACTGTTGCATTTCAAATATTGGTTGATTCTGTTCCAACAGCAAAACTTTCTCTAGGATCTGTTGCTACCGTTAATAATCTCATTGCTTGTACCGTTGAGAGGATTAAGGCTTCGTTGTCCGGTGAAGTTGCTTGA 2334 0.4443 MQSSLMIPTINMPSMIEKNNNNNVGVFELSSSLSLAQPNLMEAGQLHHHQLLPLDMTQNNNTSESDVPRIREDEFFDSATKSGNSENQEAVNSGGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTALRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSGPPRPLELGIGGFGGQPGLSGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLTTLEGASILNEEEYVRSFPRGIGPKPAGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSSRSRRRPSGCLIQEMPNGYSKVIWVEHVEVDERGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTNGGNGGGESGHGGGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi318g00018 777 CDD START_ArGLABRA2_like 290 513 - -
Vivi318g00018 777 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 101 772 IPR042160 -
Vivi318g00018 777 FunFam Homeobox-leucine zipper protein GLABRA 2 295 513 - -
Vivi318g00018 777 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Vivi318g00018 777 CDD homeodomain 104 162 IPR001356 GO:0003677
Vivi318g00018 777 SMART HOX_1 102 165 IPR001356 GO:0003677
Vivi318g00018 777 Gene3D - 341 511 IPR023393 -
Vivi318g00018 777 SMART START_1 295 514 IPR002913 GO:0008289
Vivi318g00018 777 FunFam Homeobox-leucine zipper protein HDG1 90 177 - -
Vivi318g00018 777 ProSiteProfiles START domain profile. 286 517 IPR002913 GO:0008289
Vivi318g00018 777 SUPERFAMILY Bet v1-like 534 769 - -
Vivi318g00018 777 Pfam Homeodomain 104 159 IPR001356 GO:0003677
Vivi318g00018 777 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677
Vivi318g00018 777 Pfam START domain 296 514 IPR002913 GO:0008289
Vivi318g00018 777 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981|GO:0006355
Vivi318g00018 777 Coils Coil 160 187 - -
Vivi318g00018 777 SUPERFAMILY Bet v1-like 286 516 - -
Vivi318g00018 777 MobiDBLite consensus disorder prediction 79 112 - -
Vivi318g00018 777 Gene3D - 89 177 - -
Vivi318g00018 777 MobiDBLite consensus disorder prediction 80 94 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi318g00018 70 777 Homeobox Transcription Factor Family AT1G05230 79.494 0.0 1136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi318g00018 START 3.2e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi318g00018 K09338 - gmx:100797992 1298.49