Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi318g00006 ATGGCCAACATGGAACAAACCTCTAAGGAAGTTCCTGCTGATTCTTCCATAGATCAATCCAATTCCAATTCCAGTAGTATTACTCAAGTAAATTCCATGACTGAATTTTCCCAAGACGAGGAAGCTCTTATCATCAGGATGTATAAACTACTAGGAGATAGGTGGCCATTAATTGCTGGAAGAATTCCTGGAAGAACTGCTGAAGATATAAAGAATTACTGGACTTCAAGATACGCTTTCACTAGCCAATCAAGTGAATAA 261 0.3831 MANMEQTSKEVPADSSIDQSNSNSSSITQVNSMTEFSQDEEALIIRMYKLLGDRWPLIAGRIPGRTAEDIKNYWTSRYAFTSQSSE 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi318g00006 86 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 82 IPR017930 -
Vivi318g00006 86 FunFam MYB-like transcription factor 35 77 - -
Vivi318g00006 86 MobiDBLite consensus disorder prediction 1 33 - -
Vivi318g00006 86 Pfam Myb-like DNA-binding domain 35 75 IPR001005 -
Vivi318g00006 86 SMART sant 32 80 IPR001005 -
Vivi318g00006 86 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 34 77 - -
Vivi318g00006 86 Gene3D - 35 77 - -
Vivi318g00006 86 ProSiteProfiles Myb-like domain profile. 36 78 IPR001005 -
Vivi318g00006 86 CDD SANT 35 74 IPR001005 -
Vivi318g00006 86 SUPERFAMILY Homeodomain-like 35 77 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi318g00006 36 79 MYB Transcription Factor Family AT5G14750 56.818 1.60e-15 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi318g00006 Myb_DNA-binding 6.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi318g00006 - - vvo:131629086 149.828