Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi317g00022 ATGGAAACTTTCTCTCACGTTCCCCCAGGTTTTAGGTTCCATCCCACAGATGAGGAACTTGTTGATTACTACCTAAGAAAAAAAATAGCTTCTAGAAGGATTGATCTTGATGTCATAAAAGATGTTGACCTTTACAAAATTGAACCATGGGATCTTGTAGAGCTTTGCAGAATAGGAGCAGAAGAACAAAATGAATGGTATTTTTTTAGCCATAAAGATAAGAAGTATCCAACTGGGACAAGAACAAATAGGGCAACTGCAGCTGGATTTTGGAAAGCAACTGGAAGAGATAAGGCAATTTATAGTAAGCATGATTTGATTGGAATGAGGAAAACATTGGTGTTTTATAAAGGTAGAGCTCCAAATGGACAAAAATCAGATTGGATAATGCATGAGTATAGGCTTGAAAATGATGAAAATGGTGCACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACAACACTTCGCAAAATGAGTGAACATGACTCCCCTTGTTGGTATGATGATCAAGTTTCTTTCATGCAAGACATGGACTCACCAAATCAATCCTCTCAACCAAATTTAATTTACCAACAACTTCCATATCCTTGCAAAAAAGAGCTAGATAATTCACCATACCAAAACCATTTTCTTAATCTCCCTCTTCTAGAGAGTCCAAAGCTTGCTCAACCTAATCCAATGGTGACAACATATGGTACCATAGATCATACAAATTCCATGCTCCCTTCACCAATGCTACTTCAAGAAGAACAACATGTCTTGCAAACTAATCAACAACAAAACCTTCATGCTATGTATGGGAACAACTCCGATGTCGATGATCAAGTTACCGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGCAACAAAAGACAATGATGATGACAACATCTTTCATGGCAATGTTGAGTTCAGAAATTTGGAGAAACAAGAAATGGTGCCTCATGAAAATGCTTCAACATCAAACTCAAGTTGTCCTATTGATTTGTGGAAATAG 1035 0.3739 METFSHVPPGFRFHPTDEELVDYYLRKKIASRRIDLDVIKDVDLYKIEPWDLVELCRIGAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLENDENGAPQEEGWVVCRVFKKRVTTTLRKMSEHDSPCWYDDQVSFMQDMDSPNQSSQPNLIYQQLPYPCKKELDNSPYQNHFLNLPLLESPKLAQPNPMVTTYGTIDHTNSMLPSPMLLQEEQHVLQTNQQQNLHAMYGNNSDVDDQVTDWRVLDKFVASQLSQDATKDNDDDNIFHGNVEFRNLEKQEMVPHENASTSNSSCPIDLWK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi317g00022 344 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vivi317g00022 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 261 - -
Vivi317g00022 344 MobiDBLite consensus disorder prediction 326 344 - -
Vivi317g00022 344 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vivi317g00022 344 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vivi317g00022 344 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Vivi317g00022 344 MobiDBLite consensus disorder prediction 324 344 - -
Vivi317g00022 344 FunFam NAC domain-containing protein 16 160 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi317g00022 1 344 NAC Transcription Factor Family AT1G12260 56.906 2.04e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi317g00022 NAM 5.9e-38 No_clan