Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi317g00021 ATGGCTCGTGGAAAGGTTCAGCTGAAGCGAATTGAGAACCCGGTGCATAGACAAGTGACCTTTTGTAAACGCCGAGCGGGGCTTCTGAAGAAGGCTAAGGAGCTCTCCGTGCTTTGCGATGCTGAAATTGGCCTCGTCATTTTCTCCGCTCATGGAAAGCTCTACGAACTCGCCACCAAAGGAACCATGCAAGGGGTAATAGAGAGGTACTTGAAGTTCACACATGGGACTCAATCTGAAGCTATCACTGAACCACATCCTTTGCTAATGGATGCTAAAGAAGAAACCAATGTGCTCAAACAAGAAATCGACACATTGCAAAAGGGTATCAGGTATTTGTTTGGAGGAGGATTAGGAACATTGGCAATGGATGAACTTCAAGTTCTTGAGAAGAATCTTGAAATGTGGATGTATCATGTTCGCTCAATGAAGATGAACATTATGTCACAAGAAATTCAAGCTTTGAGAGATAAGGAGGGAACACTTAAGGCAGCAAATACATATCTCCACGATTTGGTGTTGGAGAATACTTCTGCCACAAACTTTGTTCCATTTGCTACTGATATTTCATACCCATTATTTCTACAAGATGGGATTTTTCAGCTCTAG 609 0.4269 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGVIERYLKFTHGTQSEAITEPHPLLMDAKEETNVLKQEIDTLQKGIRYLFGGGLGTLAMDELQVLEKNLEMWMYHVRSMKMNIMSQEIQALRDKEGTLKAANTYLHDLVLENTSATNFVPFATDISYPLFLQDGIFQL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi317g00021 202 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Vivi317g00021 202 Coils Coil 89 109 - -
Vivi317g00021 202 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Vivi317g00021 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi317g00021 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Vivi317g00021 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi317g00021 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi317g00021 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi317g00021 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi317g00021 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi317g00021 202 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vivi317g00021 202 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi317g00021 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Vivi317g00021 202 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi317g00021 1 202 MADS-box Gene Family AT1G71692 59.716 1.04e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi317g00021 K-box 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi317g00021 - - mtr:25491856 332.028