Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi317g00011 ATGACCGTACACTCAACCTTCAAGCTTCAGAATCCGAAGCTAAAAGCTTCAAGATCAAATTTTGAAACTAACCCATCATTCAAAACCACCACCAAACCCGAAAACAAGATGAAACTACTCCGGGTCATTCTCACTGACCATGACGCAACCGATTCCGACTCTTCCGGCGAAGATGAACCGTCACCGCCACAAAAGCTTCGAAAAGGGAAGAGAGAAATAACCGAAATCACCATGCACATGCACTTTCCTCTTGTATCTGATTCTCCGAAAACCTCACCTTCTTCTTCAGCTTGCTCCACTGACCCGACCCGTTTCAAAAGACGTGGAAAAGTGGTTAGAAATCCCCGGCAGCAAAACATGTTCCGCGGCGTTCGTCAGAGACCGTGGGGACGGTGGACGGCCGAGATCCGTGACCCGAACCAACGCAAACGTGTCTGGTTAGGAACTTTTGACACGGCGGAGGAAGCTGCAGCTGTGTACGACGAAGCCGCCGTGAAGCTTAAGGGTCCAAAGGCAGTTACCAACTTTTCCGGGAATTTTCCAGACAGCGACGCCGTTGAGAAAGATGTCAACGAGCCGTCAAAGATTTTCGCCGTTGACGGTTTCGCTTCTCCGACGTCTGTTCTGCCTTACTACGACGGCGACTCGACGCCGTTTGACAGTTTTCGTTACGGAACTGTGGATGCGTTTGGATTCGATATTGATACGCCGTTAAGTTTAACGGACGTTAACTTTATCGGGTTTGGGAAAGAAAAAGAAGAGTTCGGTGAGTTTGACTTGGACGAGTTCCTGACGTGGCCCAGTTAA 807 0.4944 MTVHSTFKLQNPKLKASRSNFETNPSFKTTTKPENKMKLLRVILTDHDATDSDSSGEDEPSPPQKLRKGKREITEITMHMHFPLVSDSPKTSPSSSACSTDPTRFKRRGKVVRNPRQQNMFRGVRQRPWGRWTAEIRDPNQRKRVWLGTFDTAEEAAAVYDEAAVKLKGPKAVTNFSGNFPDSDAVEKDVNEPSKIFAVDGFASPTSVLPYYDGDSTPFDSFRYGTVDAFGFDIDTPLSLTDVNFIGFGKEKEEFGEFDLDEFLTWPS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi317g00011 268 MobiDBLite consensus disorder prediction 87 102 - -
Vivi317g00011 268 CDD AP2 121 176 IPR001471 GO:0003700|GO:0006355
Vivi317g00011 268 FunFam Ethylene-responsive transcription factor 2 119 178 - -
Vivi317g00011 268 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 185 - -
Vivi317g00011 268 Pfam AP2 domain 121 169 IPR001471 GO:0003700|GO:0006355
Vivi317g00011 268 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Vivi317g00011 268 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Vivi317g00011 268 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Vivi317g00011 268 MobiDBLite consensus disorder prediction 84 104 - -
Vivi317g00011 268 SUPERFAMILY DNA-binding domain 120 177 IPR016177 GO:0003677
Vivi317g00011 268 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Vivi317g00011 268 MobiDBLite consensus disorder prediction 1 68 - -
Vivi317g00011 268 MobiDBLite consensus disorder prediction 1 33 - -
Vivi317g00011 268 PIRSF PTI6 7 268 IPR017392 GO:0003700
Vivi317g00011 268 Gene3D AP2/ERF domain 120 178 IPR036955 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi317g00011 26 211 AP2-EREBP Transcription Factor Family AT4G27950 43.902 2.06e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi317g00011 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi317g00011 K13434 - gmx:102660028 271.166