Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi317g00006 ATGAATCCTCAACATGAATCGGAATTTGATTCCGGTGCTCTCAAACCTTATTATGGAAAGCTATTTCCTTTTGCTGATATGTTTAAATGGATGTCTTATGGCCATGATGGGAAACATCCTGGTTGTGATCAGTCTTACTTTGGAAGAAGGGAATTTTCCTTCACTCTGAAAGGTGATTTTTATCTGCGTTTTCAATCTTACAACAATGTCCTCGAACTTGAAAACTCGATCAAAGATAAATGCCCTTTAAAGATTGACATTGGACCTGTCTACACTGTCGATCCTGCAAAAAGGCATGCCTATGCACAGGGTGATAATAGCGTCTTCACTCCAGTTGAGAGGGAGTTGATTTTTGATATAGATATGACAGATTATGATGATATCAGATACTGCTGCAAGGGTGCTGATGTTTGCTTGGATTGCTGGCCGTTGATGACCATAGCCATCAAAGTGATTGATACTTCCTTAAGAGATGAGTTTGGTTTTAAGCATATACTCTGGGTCTATAGTGGACGTAGAGGTGTTCATTGTTGGGTGTGTGATGGGAAGGCAAGAAGGTTGACAAATGAGCAAAGATCTGCTATTGCTGAATATTATCGTGTTTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCTTTGACTGGTGGCGCTCTTCATCCTTTCTTGGCGACATCATACACCAATGTCCTCAAGGACTATTTTGAGAAAAAACTGCTTACAAATCAAAACTTACTTGCTACTGAGGAGAGATATGAGAAGATCCTAAGCATGATTCCTGATGAATCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAATAGACGGTCCTCTAGTGCAAAAGAAGATATTAACGTTGTGAGATGGGAACAGTGCAAGCAGTTGCTGCAATCTGGAAAACATAAGGCACAGGGGCTGCGTAGATGTGTTGAAGAAATTGTGTTCTCCTATACTTACCCCAGGCTAGATATGGAGGTTTCAAAACATATGAATCATTTGCTTAAAGCACCGTTTTGTGTTCATCCAAAAACAGGTCGTGTCTGTGTCCCTATTGACCCAAATCGGTGTGATGAGTTTGATCCTACTACAGTACCCACCCTTTTCCAGCTTCTAGAGGAGCTTAACAATGAAGGCTCGAGAGCTGATGTTAATGGCAAATGGAGTGGAACTTCGCTTGGAAATGCTGTCAAGCTTTTCAGATCGTCATTCTTAGAACCTCTGCAGAAAGCCTGCAAGGAGGAGATAGAAAGAGCCTATAATTTGAAGTTGCAGCAGTCAAAGAACTCCATAGGTTGGTAA 1302 0.4094 MNPQHESEFDSGALKPYYGKLFPFADMFKWMSYGHDGKHPGCDQSYFGRREFSFTLKGDFYLRFQSYNNVLELENSIKDKCPLKIDIGPVYTVDPAKRHAYAQGDNSVFTPVERELIFDIDMTDYDDIRYCCKGADVCLDCWPLMTIAIKVIDTSLRDEFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRSAIAEYYRVYKGNENSHKKVSLTGGALHPFLATSYTNVLKDYFEKKLLTNQNLLATEERYEKILSMIPDESIASELRGRWQDNRRSSSAKEDINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFSYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTLFQLLEELNNEGSRADVNGKWSGTSLGNAVKLFRSSFLEPLQKACKEEIERAYNLKLQQSKNSIGW 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi317g00006 433 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 15 370 IPR014052 GO:0003896|GO:0006269
Vivi317g00006 433 Pfam DNA primase small subunit 118 353 IPR002755 GO:0003896|GO:0006269
Vivi317g00006 433 FunFam DNA primase 1 414 - -
Vivi317g00006 433 Gene3D DNA primase, PRIM domain 2 414 - -
Vivi317g00006 433 SUPERFAMILY Prim-pol domain 11 377 - -
Vivi317g00006 433 CDD AE_Prim_S 23 362 IPR014052 GO:0003896|GO:0006269
Vivi317g00006 433 PANTHER DNA PRIMASE SMALL SUBUNIT 6 418 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi317g00006 3 433 Core DNA Replication Machinery Family AT5G41880 65.741 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi317g00006 K02684 - gmx:100780574 778.474