LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi315g00058	ATGAAACACAATCATAAACTAGCAAAAACAAGTGAAGAAAGCGAAGGACAGCCTATAAGATGTAAAGCTGCGGTTGCAAGAAAACCAGGTGAGCCATTGGTTATAGAAGAGATTATTGTTGCCCCACCAATGCCTCATGAAGTTCGGATTCGTATTCTATGTACTTCTCTCTGCCACAGTGATTTCACCTTTTGGAAGATGCAGGAATCTCCTGGCATTTTCCCAAGAATTCTAGGTCATGAGGCAGCTGGGATTGTGGAAAGTGTAGGAAAGGATGTAACTGAAGTTACAAAAGGAGATGTTGTTATTCCAATTTTCCTACCAGATTGTGGAGAATGTAAAGATTGCAAATCAACCAAGAGCAACGTCTGTACTAATTTCCCATTCAAGGTTTCCCCTTGGATGCCAAGACATGGAAGCACTAGATTCACTGACCTAAACGGAGAGATCATATATCATTTCATGTTTGTTTCAAGTTTCAGCGAGTACACTGTGGTTGACATCGCCAATGTAACAAAGATTGATCCACAAATCCCTCCTGATCGAGCATGTCTTCTCAGTTGCGGCGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACTGCAGGTGTGGAGCCAGGGTCTACAGTCGCTATTTTTGGGCTGGGATCTGTTGGATTAGCAGTTGCAGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATTGGTGTCGATGTCATCCCTGAAAAATTTGAAATCGGAAAGAAGTTTGGACTTACAGATTTTATCCATGCTGGAGAAAGTGGGAACAAACCTGTGAGCCAGGTTATCCTAGAGATGACCGACGGAGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTTCCTGCAGAAAGGGTTGGGGTAAAACAATTGTTGTAGGAGTGGACAAACCAGGAGCTAGGTTGAGTTTCAGTTCTAGTGAGGTTCTTCATGATGGGAAGAGCCTCATGGGATCCTTGTATGGAGGACTCAAACCCAAATCTCATGTTCCGATTCTGTTGAAGCGTTACATGGACAAGGAACTGCAGTTGGATGAATTTGTGACTCATGAAGTGGAGTTTAAGGACATAAACAAAGCTTTTGATTTGTTGAGTAAAGGACAGTGTCTTCGATGTGTGATTTGGATGGAAACATGA	1179	0.4309	MKHNHKLAKTSEESEGQPIRCKAAVARKPGEPLVIEEIIVAPPMPHEVRIRILCTSLCHSDFTFWKMQESPGIFPRILGHEAAGIVESVGKDVTEVTKGDVVIPIFLPDCGECKDCKSTKSNVCTNFPFKVSPWMPRHGSTRFTDLNGEIIYHFMFVSSFSEYTVVDIANVTKIDPQIPPDRACLLSCGVSTGVGAAWRTAGVEPGSTVAIFGLGSVGLAVAEGARLCGATRIIGVDVIPEKFEIGKKFGLTDFIHAGESGNKPVSQVILEMTDGGADYCFECVGMASLVHEAYASCRKGWGKTIVVGVDKPGARLSFSSSEVLHDGKSLMGSLYGGLKPKSHVPILLKRYMDKELQLDEFVTHEVEFKDINKAFDLLSKGQCLRCVIWMET	392

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi315g00058	392	FunFam	S-(hydroxymethyl)glutathione dehydrogenase	193	333	-	-
	Vivi315g00058	392	SUPERFAMILY	GroES-like	341	389	IPR011032	-
	Vivi315g00058	392	FunFam	Alcohol dehydrogenase 6	24	204	-	-
	Vivi315g00058	392	Gene3D	-	193	333	-	-
	Vivi315g00058	392	Pfam	Alcohol dehydrogenase GroES-like domain	45	173	IPR013154	-
	Vivi315g00058	392	SUPERFAMILY	GroES-like	14	199	IPR011032	-
	Vivi315g00058	392	PANTHER	ALCOHOL DEHYDROGENASE	16	388	-	-
	Vivi315g00058	392	Pfam	Zinc-binding dehydrogenase	217	337	IPR013149	-
	Vivi315g00058	392	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	178	353	IPR036291	-
	Vivi315g00058	392	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	79	93	IPR002328	GO:0008270\|GO:0016491
	Vivi315g00058	392	Gene3D	-	24	385	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi315g00058	47	214	Monolignol Biosynthesis Gene Families	AT4G37970	27.811	1.59e-10	59.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi315g00058	K00121		-	gmx:100817521	686.026