Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi315g00006 ATGGCTATGCAACAATACATAAGTTCTTCTACATCTTCTATGGTAACATCTTTGAAGAAATTTGATGTTTTTATTAGTTTTCGTGGTGAGGATACTCGTAAAACCTTCACGAGCCATCTTTATGAAGCTCTTAACAAGAAAGTTCTAACATTTATTGACATTGAGCTTGAAAAAGGAGATGACATCTCATCAGCACTTAACAAAGCCATTGAGGGGTCAGATGCATCTATAGTCATATTTTCAAAAGACTATGCATCTTCAAAATGGTGTTTGAATGAACTCGTTAAGATTCTAGAATGCAAGAGAGACCGAAGACAAGTTGTCATACCCGTTTTCTATGAAATAGAACCATCACATGTAAGATACCAAACTGGGAATTATAAGCAAGCTTTTGAAAAACACGAGCGAGAATTGAGACACAACAAAGACAAGTTACAGAAATGGAAAGATGCACTCACCGAAGCAGCCAATTTATCTGGATGGAACTCTCAAAATTACGGGATGGAATCAAATTTTATTAAAGACATTGTGGAAGATGTTTTGAAAAGATTGAATCGTAGACACCCATTTGAAGTTAATAAGGAACTTGTTGGCATTGAGAAAAAGTATGAGAAGATGGAATCTTTATTGAAAATTGGATCAAATGATGTTAGAACTCTTGTATTATGGGGCATGGGAGGCATAGGAAAGACCACTCTAGCAAAACACTTATATGCTAAATTGTGTTCTCAATTTGAACGTACTTGCTTCATTGAAAATATAAGGGAAGAGTCAACCAAGCGTGGACTCACGTTTGTACGTAACAAACTTTTTTCTACATTGTTGGAGCTTCCTCTCAATGCACCTTATGTAGAAACCCCAATTTTCATAAATCGACTTGCACATGAAAGAAGTCTCATTGTGTTGGATGATGTTGCAACCATAGAGCAAGCAGAAAATGTTAACATAGTCAATAATTGCTTGGGAGAGGGAAGTAGAGTCATTATCACAACTAGAGATATGCAGATATGTAGCCAATTTGACGAGTGCGAAATATATGAGTTTGAGGAAATGAATATAGATGAGTCTCTTCAATTATTCTGTTGGAATGCCTTTAGAGAAAAATGTCCAAAGGATGGATTTTATAATCTATCAAAAGAAGCAATTCTTTATTGCAGAGGCAATCCCTTAGCTTTGAAAGTTTTAGGTGCAAATTTTCGTACAAAAAAAAGTAAAGAAGGGTGGGAAAGTGAATTGGAGAAACTCAAAAAGATTCCCAATAGAAAAATCCATGATGTGTTAAAATTGAGTTATGATGACTTAGATCGTACTCAACAAGACATATTTCTAGACATTGCATGCATCTCCACATCAGCAGGTCCTTATGATTATCGTGATAATAAATATTACAGAACAGCACTATGGAATGCTTGCGAGTTTTTTGCAGAGAGTGGATTACAAGTCCTTAAAGATAAAGCGCTCATATATTTTGATAACGAACGCTATATCAATATGCATGGTTTGTTAAAAGAAGTGGGAAAAGAGATTGTTATCAGAGAATCTGTCAAACACCCCGGAAGAAGAAGTCGATTGTCGAATTATGAGGATCTGTATGATGTACTGAAATATAACAAGGGAACTGAAGTTGTCGAAGCTATAAAATTTGAAGCTCATCATCATATTGAAGATTTATATTTGAGTTCTGATTGCTTTAAAAACATGACCAACTTAAGACATCTTCATATCACTATAGGTACAAAAAGTAGACTGCATCTCCTTGAAGGTCTTGAGTGTTTGTCTGATAAACTGAGGCATCTTTACTGGGATTCATTCCCACTCGAGTCTTTTCCATCAACGTTTTGTGGAGAATGGCTTGTACAACTTACAATGAACTATAGCAAGCTTAAAAAGCTTTGGGATGGAACTCAGAGGCTTGACAATTTAATGATTCTTAATCTTGATGACTCCGAAGACCTGATTGAGACTCCAGATTTATCAAGGGCCCCAAATCTTCAAATAGTGTCCCTTTCTAATTGTAAGAGTCTCTGTCAACTCCATCCATCCATTTTCAGTATCCCCAAGCTTACAGAACTAAAATTAAATGGATGCAAAGAGATTGAAAGCCTGAAACATAACATTAATTTAAAATCTCTCCAAATACTCAATCTCTCAGATTCTTCTGTCGCCAAATTTTCGGCGACATCAGAGGAAATGATGGAGCTGTCTCTACGGGGCGCTGTTGCACAGGAATTTTCTTCATTGATGTTGTGTAACAAGAAACTTACTCAACTGCACCTTCAGGGATGCACACAAATCAATACATCGAGTCTTATGTTTATCTTTGATGGCACACCGTCTTTAAAAAAACTAAATTTGAGCAAGTGCCGCTACTTAGAAATTCTCCCTGATAACATCCAAAACTGTTCAATGTTGGAAATTCTTGATTTAGATGACTGCCGGAAACTTAAGTCCCTACCAAAACTTCCAGCTAGCTTGCAAAGCTTTACTGCACGGAATTGCATTCATTTGGAGACTAACTCCATTCAACAATCAATACTTGAGAATATGTTACACAAACTCCGTTCACATGAGAACATGTTACGTGACAGATCCCATTCACGGAGCAACAGGAAAATGTCAACTTATGAAATGGATTTATTTTTCTTTCCAGGTGGTGAAGTTCCTAGTGAGTTTAATTTTCATACAACAAAGGGTTCCATAGTTATTCCTCCTATTCCAAAATATGGTTTGTGTGGTTTCGTCATTTGCATCATTCTCTCTAGGGGAGTGAATAAAAGTACTGCCAGGTATTTGGAAAGTGAAGTTTTGTGTACTATTTATCAACACACCGAAGAAATTGACAATGAGAAATGGTATTGGTCAGGCGTATTAATTTCAGATCATGTGTTGTTAAGTTGCATAGGGTGTTATAATTCTGACTGGGTGAAGATGTGGAGTAAAAGTAGAGGTGATCATTACAACCTTTCATTTAAATTCAATTGTACAAACAATTATGGTACGACACCAACATGGATCAAGAGATGCGGGGTAATCTCTGTATATGACTGGAAACATAGTTTTTGTGTTGGATAG 3072 0.3626 MAMQQYISSSTSSMVTSLKKFDVFISFRGEDTRKTFTSHLYEALNKKVLTFIDIELEKGDDISSALNKAIEGSDASIVIFSKDYASSKWCLNELVKILECKRDRRQVVIPVFYEIEPSHVRYQTGNYKQAFEKHERELRHNKDKLQKWKDALTEAANLSGWNSQNYGMESNFIKDIVEDVLKRLNRRHPFEVNKELVGIEKKYEKMESLLKIGSNDVRTLVLWGMGGIGKTTLAKHLYAKLCSQFERTCFIENIREESTKRGLTFVRNKLFSTLLELPLNAPYVETPIFINRLAHERSLIVLDDVATIEQAENVNIVNNCLGEGSRVIITTRDMQICSQFDECEIYEFEEMNIDESLQLFCWNAFREKCPKDGFYNLSKEAILYCRGNPLALKVLGANFRTKKSKEGWESELEKLKKIPNRKIHDVLKLSYDDLDRTQQDIFLDIACISTSAGPYDYRDNKYYRTALWNACEFFAESGLQVLKDKALIYFDNERYINMHGLLKEVGKEIVIRESVKHPGRRSRLSNYEDLYDVLKYNKGTEVVEAIKFEAHHHIEDLYLSSDCFKNMTNLRHLHITIGTKSRLHLLEGLECLSDKLRHLYWDSFPLESFPSTFCGEWLVQLTMNYSKLKKLWDGTQRLDNLMILNLDDSEDLIETPDLSRAPNLQIVSLSNCKSLCQLHPSIFSIPKLTELKLNGCKEIESLKHNINLKSLQILNLSDSSVAKFSATSEEMMELSLRGAVAQEFSSLMLCNKKLTQLHLQGCTQINTSSLMFIFDGTPSLKKLNLSKCRYLEILPDNIQNCSMLEILDLDDCRKLKSLPKLPASLQSFTARNCIHLETNSIQQSILENMLHKLRSHENMLRDRSHSRSNRKMSTYEMDLFFFPGGEVPSEFNFHTTKGSIVIPPIPKYGLCGFVICIILSRGVNKSTARYLESEVLCTIYQHTEEIDNEKWYWSGVLISDHVLLSCIGCYNSDWVKMWSKSRGDHYNLSFKFNCTNNYGTTPTWIKRCGVISVYDWKHSFCVG 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi315g00006 1023 FunFam Disease resistance protein (TIR-NBS-LRR class) 352 435 - -
Vivi315g00006 1023 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 161 IPR035897 -
Vivi315g00006 1023 SMART till_3 20 158 IPR000157 GO:0007165
Vivi315g00006 1023 Pfam Leucine Rich Repeat 618 636 IPR011713 -
Vivi315g00006 1023 PRINTS Disease resistance protein signature 292 306 - -
Vivi315g00006 1023 PRINTS Disease resistance protein signature 219 234 - -
Vivi315g00006 1023 PRINTS Disease resistance protein signature 385 399 - -
Vivi315g00006 1023 PRINTS Disease resistance protein signature 799 815 - -
Vivi315g00006 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 445 IPR027417 -
Vivi315g00006 1023 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 765 IPR044974 GO:0006952
Vivi315g00006 1023 Coils Coil 131 151 - -
Vivi315g00006 1023 Gene3D - 351 435 IPR042197 -
Vivi315g00006 1023 Gene3D Ribonuclease Inhibitor 512 861 IPR032675 -
Vivi315g00006 1023 Gene3D - 18 185 IPR035897 -
Vivi315g00006 1023 ProSiteProfiles TIR domain profile. 19 184 IPR000157 GO:0007165
Vivi315g00006 1023 SUPERFAMILY "Winged helix" DNA-binding domain 422 534 IPR036390 -
Vivi315g00006 1023 Pfam TIR domain 20 197 IPR000157 GO:0007165
Vivi315g00006 1023 SUPERFAMILY L domain-like 556 861 - -
Vivi315g00006 1023 Gene3D - 186 345 IPR027417 -
Vivi315g00006 1023 Pfam NB-ARC domain 207 427 IPR002182 GO:0043531
Vivi315g00006 1023 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 186 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi315g00006 4 830 WRKY Transcription Factor Family AT4G12020 29.625 2.08e-83 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi315g00006 - - vvo:131628915 2066.58