Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi315g00003 ATGGCTGTGCAACAATATGTAGGTTCTTCTTCTTCTTCATCTTCTATGGTAACATCTTTGAAGAAATTTAATGTTTTTATTAGTTTTCGTGGTGAGGATACTCGCAAAACCTTCACGAGCCATCTTTACGAAGCTCTTAACAAAAAAGTTCTAACATTTATTGACATTGAGCTTGAAAAAGGAGATGAGATCTCATCAACACTCAACAAAGCCATTGAGCGGTCAGATGCATCTATAGTCATATTTTCAAAAGACTATGCATCTTCAAAATGGTGTTTGGATGAACTCGTTAAGATTCTAGAATGTAAGAGAGATCGGAGACAGATTGTCGTACCTGTTTTCTATGATTTAGAACCATCTCATGTGAGGAATCAAACCGGGATTTATAAGCAAGCTTTTGAAAAACATGAGCTAGATTTGAGACACAACAAAGACAAGTTGCAGAAATGGAAAGATGCACTCACTGAAGCAGCCAATTTATCGGGCTGGAACTCTCAAAATTACGGGATGGACTCAAATTTCGTTAACGCCGTTGTAGAAGATGTTTTGAATAAATTGTATCGGAGATACCCATTTGAAGTTAACAAGGAACTTGTTGGCATTGATACAAAGTATGAAAAGATGGAATCTTTACTGAAAATTGGGTCAAATGAAGTTAGATCTCTTGTATTATGGGGAATGGGAGGCATGGGAAAGACCACTCTAGCCAAACATTTATATGGTAGACTGCATTCTCAATTTGAACGTACTTGCTTCATTGAAAATATAAGGGAAGAATCAACCAAACATGGACTCACCTACGTCCGTAATAAACTTTTTTCTACATTGTTGGAGCTTCCTCTCAATACACCTTATGTAGAAACCCCAATTTTCAAAAACAAACTTGCACATGAAAGGAGTCTCATTGTGTTGGATGATGTGGCAACCTTAGAACAAGCAGAAAATATTAACATAGTCAATAAATACTTGGGAGAGGGAAGTAGAGTCGTTATCACAACTAAAGATATGCAGATATGTAGCCAATTTGACAAGTGTGACATATATAAGTTTGAGGAAATGAATGCAGATGAATCTGTTCAACTATTCTGCAAGAATGCTTTTGGAGAAAAATGTCCTAAGGATGGATATGATAATCTATCAAAAAAGGCAATTCTTTATTGCAGAGGCAATCCCTTAGCTTTGAAAGTTTTAGGTGCAAATTTTCGTACAAAAAAAAGTAAAAAAGAGTGGGAAAGTGAATTGGAGAAACTCAAAAAGATTCCCAATAGAAAAATCTATGATGTGTTAAAATTGAGTTATGATGACTTAGATCGTACTCAACAAGACATATTTCTAGACATTGCATGCATCTCCAGACCACCGGTTTATTATAACTCTCTTACTCAAAAAGATTACTTAACAGCAGTATGTAATGCTTGCAAGTTTTATGCAGAGAGTGGATTAGAAGTCCTTTTAGATAAAGCGCTCATATATTTTGATTCCAAGCACTTTATCACAATGCATGCTTTATTAAAAGAAATGGGAAAAGAGATTGTCATGACAGAATCTGTCAAAGACCCCGGAAGAAGAAGTCGATTGTGGGATCAAAAGGATGTGTATGATGTATTGAAGTACAAGAAGGGAACTGAAGTTGTTGAAGTTATAGAATTTAATATTGATCAACTTGAGGATTTGTACTTGAGCTCTGATTCTTTTAAAAGCATGACCAACTTAAGACATCTTCATATTGAGTCTATAGATAGAGAAAATAGACTGCATCTCCTTGAAGGTCTTGAGTGGTTGTCTGATAAATTGAGGCATCTTTGTTGGATTTTATTCCCACTAGAGTCTTTGCCATCAACCTTCTGTGCAGAATGGCTTGTACAGCTTAAAATGCAGCATAGCAAGCTTAAAAAGCTTTGGAATGGAATTCAGAGGCTTGACAATTTAATGATTCTTGATCTTAATTACTCCGAAGACCTGATTGAGATTCCAGATTTATCAAGAGCCCCAAATCTTCAAATAGTATCCCTTTCTCGTTGTGAGAGTCTCTGTCAACTCCATGCATCCATTTTCAGTATCCCCAAGCTTATAGAACTACATTTAGATGGCTGCAAAAAAATTGGAAGCCTGAAAAATAACATTCATTTAAAATCTCTCCAATTACTTGATCTCTCTTTTTCTTCATATCTTACGGAATGTTCGGTGACATCTGAGGAAATTGAGTTGTCTTTATGGGGCGCTGTTGTACACGGATATTCTTCATTGATGTGGTGCAATAAGAAACTTACAGGACTGCACCTTACAGAGTGTACACAAATCAATACATCGAGTCTTTGGTTCATCCTTGATGGCACGCCGTCTTTAAAAAAACTATATTTGAGGAATTGCTGCAACTTAGAAATTCTCCCTCACAACATCCAAAATAATTCAATGTTGGAAATTCTTATTTTAAATGAATGTTCAAAACTTAAGTCTATACCAAAGCTTCCAGCCTCCTTGCAAACTCTTGAATTAAATGAATGCAGGAAACTTAAATCCCTACCAAAACTTCCAGTTAGCTTGCAAAACTTGAAAGCCAGGAATTGCATTCATTTGGACACTAACCCCGTTCAACGATCAATACTTGAGAATATGTCACTGAGTAACAGGAATCTGCCAACTTATCATTGGGAGTTCTTTTACTTTCCAGGTGGTGAAGTTCCTAGGGAGTTTTATTTTCATACAGCAAAGGCTTCCATAGTTATTCCTCCTATTCCAAAATATGGTTTGTGTGGTTTTTTCATTTGCATAATTCTCTCTGAAGAAGCGGGTCTCGTTTTCTCTGGTGAAATTATTTGTACTATTTATCAACACACCAAAGAAATTGACCAAAGGACGCGGTGTTGTACAAAAGGATTAATTTCAGATCATGTATTGTTAGACTACATAATCTGTTATGATTCCGATTGGGTGAAGGTTGGGAGTGAAAGTGGAGGTCATGATTTTAACTTTTCATTTAAATTCAGTAGTGAAGAACTTCAAGGTCTGAGAAAAGAGTGGATCAAGGGCTGTGGGGTCATTCCTGTTTATGACTTGAAACATAGTTTTGTGTTGGAGGATGGTAGAATTAGTGGAGTTGAAATTGTTGAAATACAATCCAACGCTCAGCTATTATCTGATGATATTAAAGTTTTTGATGATTGTCAACAAAATTCGAAATTTGATATTAATGAGTCACAACACCAAGAAATCGGAGCTGAAAATGAAGATGACCAGCACAAACTAATTATTCCTCAGACAGAAAATTTGGAGGAGTTAAACGATAAATCTTCTTGTTCATGTTCAATCGGTCTTTTGTTGAAGCACATACTAGAAGAATCAAAACGTCTATTTCTAAAGTAA 3363 0.3583 MAVQQYVGSSSSSSSMVTSLKKFNVFISFRGEDTRKTFTSHLYEALNKKVLTFIDIELEKGDEISSTLNKAIERSDASIVIFSKDYASSKWCLDELVKILECKRDRRQIVVPVFYDLEPSHVRNQTGIYKQAFEKHELDLRHNKDKLQKWKDALTEAANLSGWNSQNYGMDSNFVNAVVEDVLNKLYRRYPFEVNKELVGIDTKYEKMESLLKIGSNEVRSLVLWGMGGMGKTTLAKHLYGRLHSQFERTCFIENIREESTKHGLTYVRNKLFSTLLELPLNTPYVETPIFKNKLAHERSLIVLDDVATLEQAENINIVNKYLGEGSRVVITTKDMQICSQFDKCDIYKFEEMNADESVQLFCKNAFGEKCPKDGYDNLSKKAILYCRGNPLALKVLGANFRTKKSKKEWESELEKLKKIPNRKIYDVLKLSYDDLDRTQQDIFLDIACISRPPVYYNSLTQKDYLTAVCNACKFYAESGLEVLLDKALIYFDSKHFITMHALLKEMGKEIVMTESVKDPGRRSRLWDQKDVYDVLKYKKGTEVVEVIEFNIDQLEDLYLSSDSFKSMTNLRHLHIESIDRENRLHLLEGLEWLSDKLRHLCWILFPLESLPSTFCAEWLVQLKMQHSKLKKLWNGIQRLDNLMILDLNYSEDLIEIPDLSRAPNLQIVSLSRCESLCQLHASIFSIPKLIELHLDGCKKIGSLKNNIHLKSLQLLDLSFSSYLTECSVTSEEIELSLWGAVVHGYSSLMWCNKKLTGLHLTECTQINTSSLWFILDGTPSLKKLYLRNCCNLEILPHNIQNNSMLEILILNECSKLKSIPKLPASLQTLELNECRKLKSLPKLPVSLQNLKARNCIHLDTNPVQRSILENMSLSNRNLPTYHWEFFYFPGGEVPREFYFHTAKASIVIPPIPKYGLCGFFICIILSEEAGLVFSGEIICTIYQHTKEIDQRTRCCTKGLISDHVLLDYIICYDSDWVKVGSESGGHDFNFSFKFSSEELQGLRKEWIKGCGVIPVYDLKHSFVLEDGRISGVEIVEIQSNAQLLSDDIKVFDDCQQNSKFDINESQHQEIGAENEDDQHKLIIPQTENLEELNDKSSCSCSIGLLLKHILEESKRLFLK 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi315g00003 1120 Gene3D - 188 347 IPR027417 -
Vivi315g00003 1120 SUPERFAMILY "Winged helix" DNA-binding domain 424 537 IPR036390 -
Vivi315g00003 1120 FunFam Disease resistance protein (TIR-NBS-LRR class) 354 437 - -
Vivi315g00003 1120 SMART till_3 22 160 IPR000157 GO:0007165
Vivi315g00003 1120 Gene3D Ribonuclease Inhibitor 499 887 IPR032675 -
Vivi315g00003 1120 Gene3D - 352 437 IPR042197 -
Vivi315g00003 1120 Pfam NB-ARC domain 209 423 IPR002182 GO:0043531
Vivi315g00003 1120 SUPERFAMILY L domain-like 556 879 - -
Vivi315g00003 1120 ProSiteProfiles TIR domain profile. 21 186 IPR000157 GO:0007165
Vivi315g00003 1120 Pfam TIR domain 22 194 IPR000157 GO:0007165
Vivi315g00003 1120 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 767 IPR044974 GO:0006952
Vivi315g00003 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 447 IPR027417 -
Vivi315g00003 1120 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 163 IPR035897 -
Vivi315g00003 1120 Gene3D - 20 187 IPR035897 -
Vivi315g00003 1120 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 188 - -
Vivi315g00003 1120 PRINTS Disease resistance protein signature 387 401 - -
Vivi315g00003 1120 PRINTS Disease resistance protein signature 221 236 - -
Vivi315g00003 1120 PRINTS Disease resistance protein signature 708 724 - -
Vivi315g00003 1120 PRINTS Disease resistance protein signature 294 308 - -
Vivi315g00003 1120 Pfam Leucine Rich Repeat 620 638 IPR011713 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi315g00003 18 853 WRKY Transcription Factor Family AT4G12020 27.986 1.68e-76 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi315g00003 - - vvo:131628915 1462.59