Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi313g00028 ATGGGAATTAATATTGTTTCTGCCATGGGAGTTTGTTTGGGAAGCCAAGTCAAAGCTGAAGGCCAAACTAACTCTGGGTTAAGTTCAAAGAGTGTGAATGTTGATACAGAAGATATCATTCTCACTAGCTCAACTAGTGAGATTGAGATATTGGCGGGATCGGTGTCTCAGACTGATCCGTGTGTGGGGGAGATTTTGCAATCATCGAATTTGAAGAGCTTTGCTTTGACAGAACTTCAGGCTGCCACGAGAAATTTCCGTGTAGACAGTGTTTTAGGAGATGGAGGATTTGGATCAGTTTTTAAGGGTTGGATTGATGAAAACTCAGCTTCTGCTGCTAAGCCTGGCAAAGGCATTGCTGTTGCTGTCAAAAAACTTTATCAGGATGGGTTCAAAGTTCATGAGGAGATGTTGGCTGATGTCAACTATCTAGGCCAACTTTCACATCCTCATCTAGTGAAACTGATTGGATACTGCCTTGAGGATGAAAACAAGCTTCTGGTCTACGAATTTATGCCGCGTGGCAGCTTGGAGAATCACTTGTTTCTCAGAGGCTCATATTTTCAACCTCTTTCTTGGTGCCTACGTTTGAAGGTTGCTCTTGGTGTTGCGAAAGGCCTCGCATTTCTTCACAGTGCGGATAAAAAAGTGATATACCGAAATTTCAAGACTTCAAATGTCTTGCTAGATTCAAATTATAATGCAAAACTTTCTAATTTTGGGCTGGCAAAGGTCGGGTCCGCGGTTGATAAAGGTCGTGTCTCCACTAGACTAACTTATGGATATGCAGCTCCAGAATACGTAGCCACCGGTATTCACAGTGCTAAGAGTGGTGTCTATAGTTTTGGAGTTGTCCTATTGGAAATATTATCAGGGAGGAGAGTTATTGACAAGAATAGACCACAGAGACAGCAGAATTTGGTGGAATGGGCTAAGCCATATCTGTCCAACAAGCGTAAGATTTTACGCGTGTTGGATAACCGTCTTGAAGGCCAATATGAACTAGACGATGCATATAAGGTTGCTACACTCTCGCTAAGGTGCCTTGCAACGGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTTACAAATTTGGAGCAGTTGCAGGTTCAAAATGTAAATGGGTGCAATCAGAATCATTTGCGTAGAAGAAGTGCTGATGATGTTACCCGTGTTAGAACAGCCACGGCTTATCCTCAACGCTCTACGTCTATGCTCTGTACATGA 1230 0.4301 MGINIVSAMGVCLGSQVKAEGQTNSGLSSKSVNVDTEDIILTSSTSEIEILAGSVSQTDPCVGEILQSSNLKSFALTELQAATRNFRVDSVLGDGGFGSVFKGWIDENSASAAKPGKGIAVAVKKLYQDGFKVHEEMLADVNYLGQLSHPHLVKLIGYCLEDENKLLVYEFMPRGSLENHLFLRGSYFQPLSWCLRLKVALGVAKGLAFLHSADKKVIYRNFKTSNVLLDSNYNAKLSNFGLAKVGSAVDKGRVSTRLTYGYAAPEYVATGIHSAKSGVYSFGVVLLEILSGRRVIDKNRPQRQQNLVEWAKPYLSNKRKILRVLDNRLEGQYELDDAYKVATLSLRCLATEAKLRPNMDEVVTNLEQLQVQNVNGCNQNHLRRRSADDVTRVRTATAYPQRSTSMLCT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi313g00028 409 SUPERFAMILY Protein kinase-like (PK-like) 67 371 IPR011009 -
Vivi313g00028 409 Gene3D Transferase(Phosphotransferase) domain 1 172 392 - -
Vivi313g00028 409 FunFam Serine/threonine-protein kinase BIK1 54 171 - -
Vivi313g00028 409 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 172 379 - -
Vivi313g00028 409 ProSiteProfiles Protein kinase domain profile. 86 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi313g00028 409 PANTHER OS01G0588500 PROTEIN-RELATED 37 370 - -
Vivi313g00028 409 ProSitePatterns Protein kinases ATP-binding region signature. 92 125 IPR017441 GO:0005524
Vivi313g00028 409 Gene3D Phosphorylase Kinase; domain 1 63 171 - -
Vivi313g00028 409 Pfam Protein tyrosine and serine/threonine kinase 88 366 IPR001245 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi313g00028 64 366 Glycoside Hydrolase AT3G07070 45.752 1.20e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi313g00028 PK_Tyr_Ser-Thr 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi313g00028 - - gmx:100798404 543.117