Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi313g00010 ATGGTTCTGATTCACGAGTGTGATGAGAGTGAGAGGTTCATTTTGCCTAAAAGTATAACTAAGATGCATGCATTATGGAAAAAGTGTGTGAAACCGTCTAGAAGCACCACCAGGAAAGTAGATTGGGAATTTTTGGAGAAAGAGGCATATAGTGTTGTGTTTGATGGCGCTTTTATGAATAGTGGAACTGACTCGGTGACTAAATTCTCAGATCAACTGGAGTTGTCCAATATCGACGACGAGGTCGATATTATTTTGGAGCCTTGTATCTCGGGGGAGAAAGTTTCCATGCAGTTTCACAGATGGATTCGCGCTTATCTTGTAGACAAAGATTCGCAAACTAGGTTTACCACTGTTGATGTTGACGGGAATGTTTCCTTCTTCGGGGAAATTGATGGTGTTGCATTGCTGTGTCGGTTTAGCCTGTTTGAGACTCCGCTAATGATTTTGGTCAGACACCCATACCAAGTAGTCGATCTACTGTCACCAATCCGACCAATGAAGTCTTGGTCTCCAGATGAAAAAATAGACGCGAAAGGGTTCGATGATCTTGAGAAACCGTTGTTACATACTCAAGAAGAAGATGATACGCCTCGACAACATGGTGTACTTACGCCTCAAATAAATGATATCAAGAGTTTTGATTCTAAAATTAAGAGAAGCCTTAAGAGCATCATGGTTTCGCCACTTCAAGCAAATTCCGTTAATGAAAACGAAATAGAAGAAACTAGAATTGAAGTAAATAAGCTAAAGAGTAAAGAAATAACAGAATGTAGAATCAAGATTAAGGGAATGACATGCACAAGCTGTTCTCGATCTGTTGAGCATGCTTTGCAAATGGTTGATGGAGTGAAAAAGGCGATAGTTGGTTTGGCATTAGATGAAGCAAAAGTGCTTTTTGATCCTATAGTCATTGATACTAACAAAATAATTGAAGCTGTAGAAGATGCTGGTTTTAGAGCAGAACTTGTTAGTTCAAGGAATGATATGAACGAAGTGCATCTAAAACTTGAAGGGATAGATTCACCGGAAGATTTAAATGTTATAGTTTCTTCTCTTAGTTTAGCTGCTGGTGTGAATCATGTTGAAGTGGATTTAACAGAAAATAAAGTTACAGTTAGCTATGATTCGAATATTACAGGTCCAAGATTTCTTATACAGTGTGTTCATGAAGCTAGTTGTGGTCACAGTGTGTATCAAGCAAGTTTGCATACTAACTCAGGAAATAGAGATATCGAGAAGTTGAATGAAATTCGTATGTACAGAAACCAAGTTTTGTTAAGCTGCTTATTTTCTGTTCCTGTGTTTATGCTTTCCATGATTCTTCCTATGCTTCCTCCGTATGGTGACTGGTTAAGCTATAAGATTCATAATATGTTCACTCTTGGTTTGTTTTTGAGATGGATCCTCAGCACTCCTGTTCAGTTCATTGTTGGCAAAAGGTTTTATTTAGGGGCATATCATTCACTAAGGAGATGGTCTGCAAACATGGATGTGCTGGTAGCACTTGGAACTAATGCTGCTTATTTCTACTCAGTATATGTTGTAGTTAAAACATTAACTTCAGCTACATTTCAAGGACAAGATTTCTTTGAGACCAGTTCTATGCTGATATCATTTATTCTATTAGGCAAATATTTGGAGATTATGGCTAAAGGGAAAACATCGGCTGCCTTAGAAAAGCTTATACAACTTGTTCCTGATAAAGCTTATTTGCTAGATTTTGATGCTAATGGAAATGTGGTTGGAGAGACAGAAATTGACACTGAACTTATACAAAAGAATGACATGATCAAGATTGTTCCTGGTGCTAAAATTCCAGCTGATGGTATTGTTATAAAAGGGAAAAGTTGTGTGAATGAAAGTATGATCACAGGTGAATCAAGACCTGTTAATAAAATTCCAGGCGATAAGGTTATCAGTGGGACCATCAATGAGAATGGTTGCTTACTGGTCAAGGCAACTCATGTTGGATCTGAGACCACGATTTATCAAATTGTTCAACTTGTAGAAGCTGCTCAACTTGCAAAAGCACCAGTTCAGAAACTTGCAGATGATATTTCAAGGGTTTTTGTTCCAATAGTTGTTGCTGCAGCCTTCATAACTTGGCTTGGATGGTTTATTCCCGGAGAAGCAGGTTTATACCCGAAAAATTGGATCCCGAAAGCTATGGATGCATTTGAATTTGCTTTGCAGTTTGCTATTTCTGTATTGGTTGTTGCTTGTCCATGTGCTCTCGGTCTAGCTACTCCAACTGCAATCATGGTTGCTTCAGGTGTCGGTGCTTCTCAAGGTGTACTCATCAAAGGTGGAGATGCAGTTGAAAAAGCACACAAGGTGAAAATTGTTGTGTTTGATAAGACTGGGACACTAACAATTGGGAAGCCAGTAGTGGTTAGAGCAGTGCTGTTTTCTAAACTTTCTATGGAGGAGTTATGTGACATGACAATTGCTGTGGAGGCAAATAGCGAACATCCAATGGCGAAAGCTGTTGTAGCATATGCAAAGGGAATGCGCAAGAGTTTCGGATCCTCTAGCAAAGATCAAGTACAAGATGTGAATGACTTTGAAGTGTACATGGGAAGTGGAGTAAGTGGAAAAGTTAAGGAAAAAACCGTTCTAGTTGGAAACAAAAGACTCATGCATGCTTTTAATATACCAATAAGTTCCATGGTGGAGACGTTCGTCTCCGAGAATGAAACTCTCGCAAGAACTTGTGTATTAGTTTCAATTGAAGGAGTAATTGCTGGAGCATTCTCTGTGACTGATCCTGTAAAGCCAGAGGCAAAGAGTGTCGTATCGTTTCTTCACTCCATGGACATCTCAACCATCATGGTCACTGGTGATAATTGGGCTACTGCAAATGCAATTGCAAATGAAGTTGGTATTAGTGAGGTTTTTGCTGAGATAGATCCTCTTGGAAAAGCCGATATAGTCAAAGACTTGCAGATGAAAGGAATGATTGTAGCAATGGTAGGTGATGGAATAAACGACTCACCGGCTTTAGCTGCTGCTGATGTTGGTATGGCAATTGGAGCTGGAACAGACATAGCAATAGAAGCAGCTGATGTAGTTCTAGTCAAAAGCAACTTAGAAGATGTGATTACAGCAATAGATTTGTCAAGAAAAACCATATCTCGCATCTGGCTAAACTATATATGGACTTTTGGTTACAACATTCTTGGTATGCCAATTGCAGCTGGTGTTTTGTACCCTTTTTTTGGAATCAGGTTGCCTCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCATCACTTAGTGTGGTTTCTTCATCACTCTTGTTGATGTTTTATAAAAAGCCTTTGAAGATGGATTATGCTATGTCTAATGTTTAA 3354 0.3915 MVLIHECDESERFILPKSITKMHALWKKCVKPSRSTTRKVDWEFLEKEAYSVVFDGAFMNSGTDSVTKFSDQLELSNIDDEVDIILEPCISGEKVSMQFHRWIRAYLVDKDSQTRFTTVDVDGNVSFFGEIDGVALLCRFSLFETPLMILVRHPYQVVDLLSPIRPMKSWSPDEKIDAKGFDDLEKPLLHTQEEDDTPRQHGVLTPQINDIKSFDSKIKRSLKSIMVSPLQANSVNENEIEETRIEVNKLKSKEITECRIKIKGMTCTSCSRSVEHALQMVDGVKKAIVGLALDEAKVLFDPIVIDTNKIIEAVEDAGFRAELVSSRNDMNEVHLKLEGIDSPEDLNVIVSSLSLAAGVNHVEVDLTENKVTVSYDSNITGPRFLIQCVHEASCGHSVYQASLHTNSGNRDIEKLNEIRMYRNQVLLSCLFSVPVFMLSMILPMLPPYGDWLSYKIHNMFTLGLFLRWILSTPVQFIVGKRFYLGAYHSLRRWSANMDVLVALGTNAAYFYSVYVVVKTLTSATFQGQDFFETSSMLISFILLGKYLEIMAKGKTSAALEKLIQLVPDKAYLLDFDANGNVVGETEIDTELIQKNDMIKIVPGAKIPADGIVIKGKSCVNESMITGESRPVNKIPGDKVISGTINENGCLLVKATHVGSETTIYQIVQLVEAAQLAKAPVQKLADDISRVFVPIVVAAAFITWLGWFIPGEAGLYPKNWIPKAMDAFEFALQFAISVLVVACPCALGLATPTAIMVASGVGASQGVLIKGGDAVEKAHKVKIVVFDKTGTLTIGKPVVVRAVLFSKLSMEELCDMTIAVEANSEHPMAKAVVAYAKGMRKSFGSSSKDQVQDVNDFEVYMGSGVSGKVKEKTVLVGNKRLMHAFNIPISSMVETFVSENETLARTCVLVSIEGVIAGAFSVTDPVKPEAKSVVSFLHSMDISTIMVTGDNWATANAIANEVGISEVFAEIDPLGKADIVKDLQMKGMIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADVVLVKSNLEDVITAIDLSRKTISRIWLNYIWTFGYNILGMPIAAGVLYPFFGIRLPPWLAGACMAASSLSVVSSSLLLMFYKKPLKMDYAMSNV 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi313g00010 1117 SUPERFAMILY HMA, heavy metal-associated domain 254 326 IPR036163 GO:0046872
Vivi313g00010 1117 Gene3D - 552 674 - -
Vivi313g00010 1117 Gene3D - 775 1042 IPR023214 -
Vivi313g00010 1117 SUPERFAMILY HMA, heavy metal-associated domain 326 398 IPR036163 GO:0046872
Vivi313g00010 1117 SFLD Haloacid Dehalogenase 766 1044 - -
Vivi313g00010 1117 Pfam Heavy-metal-associated domain 260 319 IPR006121 GO:0046872
Vivi313g00010 1117 ProSitePatterns Heavy-metal-associated domain. 262 291 IPR017969 GO:0046872
Vivi313g00010 1117 ProSiteProfiles Heavy-metal-associated domain profile. 256 322 IPR006121 GO:0046872
Vivi313g00010 1117 FunFam Probable copper-transporting ATPase HMA5 900 1049 - -
Vivi313g00010 1117 SUPERFAMILY Calcium ATPase, transduction domain A 585 670 IPR008250 -
Vivi313g00010 1117 FunFam Copper-transporting ATPase HMA5 255 326 - -
Vivi313g00010 1117 Pfam haloacid dehalogenase-like hydrolase 780 1006 - -
Vivi313g00010 1117 NCBIfam HAD-IC family P-type ATPase 537 1069 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi313g00010 1117 NCBIfam heavy metal translocating P-type ATPase 497 1101 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vivi313g00010 1117 SUPERFAMILY HAD-like 782 1098 IPR036412 -
Vivi313g00010 1117 Pfam E1-E2 ATPase 583 762 - -
Vivi313g00010 1117 SUPERFAMILY Calcium ATPase, transmembrane domain M 535 778 IPR023298 -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase signature 693 707 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase signature 534 553 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase signature 969 986 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase signature 482 501 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase signature 1065 1079 - -
Vivi313g00010 1117 FunFam Copper-transporting ATPase 1, putative 552 674 - -
Vivi313g00010 1117 SFLD p-type atpase 766 1044 IPR044492 -
Vivi313g00010 1117 ProSitePatterns E1-E2 ATPases phosphorylation site. 786 792 IPR018303 -
Vivi313g00010 1117 Gene3D - 256 328 - -
Vivi313g00010 1117 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 235 1109 - -
Vivi313g00010 1117 CDD HMA 260 322 IPR006121 GO:0046872
Vivi313g00010 1117 Gene3D - 330 399 - -
Vivi313g00010 1117 CDD P-type_ATPase_Cu-like 425 1088 - -
Vivi313g00010 1117 Gene3D - 795 925 IPR023299 GO:0000166
Vivi313g00010 1117 ProSiteProfiles Heavy-metal-associated domain profile. 331 397 IPR006121 GO:0046872
Vivi313g00010 1117 PRINTS P-type cation-transporting ATPase superfamily signature 917 928 - -
Vivi313g00010 1117 PRINTS P-type cation-transporting ATPase superfamily signature 620 634 - -
Vivi313g00010 1117 PRINTS P-type cation-transporting ATPase superfamily signature 939 949 - -
Vivi313g00010 1117 PRINTS P-type cation-transporting ATPase superfamily signature 784 798 - -
Vivi313g00010 1117 PRINTS P-type cation-transporting ATPase superfamily signature 992 1011 - -
Vivi313g00010 1117 PRINTS P-type cation-transporting ATPase superfamily signature 1015 1027 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase 1 signature 355 376 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase 1 signature 312 332 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase 1 signature 257 282 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase 1 signature 480 505 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase 1 signature 425 446 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase 1 signature 460 480 - -
Vivi313g00010 1117 PRINTS Copper-transporting ATPase 1 signature 283 306 - -
Vivi313g00010 1117 Coils Coil 233 253 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi313g00010 255 392 Primary Pumps ATPases AT1G63440 27.972 8.80e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi313g00010 K17686 - gmx:100793894 1352.04