Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi30g00003 ATGGCTAGTCATAGAATTAGAGAGATTGGTTTATCTGAGTCAGGACCTTCAAGTCAACATGTCCCTTATGGTGTTCTTCATGGAATCACTAGCTCATCATCAACTTTAATGAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTTGAAGAGGCAATAGTTCTTCAAGGAATCAAGATAAGAAATGATGAAGGAAGCAAACCAGCAGCTACACTTGAAATGTTTCCTTCATGGCCAATTAGGTTCCAACAAACACCAAGAGTTGTTGCTTCTCTCACTTCTCCATCTTTGACCAATCCATATGGAGGTTCAAAATCAGGAGGTGAAAGTAGTGATTCAGGATCAACAGAGATTCAATTTGAAACAGATTCACCATTAAGTATAAAAGCATCTTCTTCTTCAGATCATCATCATAATCATGGTTTTGATCAGATTCAGCAGCAACAGGAGATAGCAACAACTGATGAAGCTGCTTTAAGAACAGGCACATCACAGAATCAGTCAAAAGCCAAATCACCTCAACAAAAGAAAAAAGGAGCTGTTTCCACATCAGAAAAAACACTTGATCCAAAGACACTAAGAAGATTGGCACAAAATAGAGAAGCTGCAAAGAAAAGCCGATTAAGAAAAAAGGCTTATGTACAGCAGCTCGAGTCAAGTCGATTAAGATTATCGAATCTCGAACAAGATCTTCAAAGAGCGCGATCGCAGGGACTATTTTTAGGCTGTGGTGGTGGAAATATAAGCCCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGCTAGAGGAAGATCAACGGCAGTTGACCGAGCTTCGTGGCGGGCTGCATGCAGCATTGGCGGATAATGAACTTAGAGTGATTGTTGATGGATATCTGTATCATTACGACGAGCTTTTCCGCTTAAAGGAAGTCGCTGTTAAATCGGATGTTTTTCACCTTATTAAAGGTATTTGGACTTCTCCGGCCGAGCGACCGTTCATTTGGATAGGCGGTTTCAAGCCCTCCGAGCTCATCACGATGTTGACACAACAATTGGAGCCTCTAGCTGAGCAACAAATAGTAGGGATAATGGAGCTAAGACAATCATCACATCAAGCAGAAGAAGCTCTCTCTCAAGGCCATGAACAGCTCCACCATTGTATCGTCGACACCATTGCCGGAGGGCCGGTCATTGACGGCGTTCAACAGATGGTCGCTGCCATGGCCAGAATCTCCAACCTTGAAGGATTTGTCCACCAGGCTGATAATTTGAGACAACAAACACTTCATCAACTATGTCGAATATTGACTGTCCGTCAATCAGCAAGATGTTTTATTGTAATCGGAGAATATTATGGACGTCTTCGAGCTCTCAGTTCTCTTTGGGCTTCGAGACCACGAGAGAACTTGATGAATGATGATAATTCATGCCAAGCAACAACGGAATTGCAAATGGTTCAACCTTCACAAAGTCATTTCTCTAGTTTCTGA 1473 0.4229 MASHRIREIGLSESGPSSQHVPYGVLHGITSSSSTLMNQGSAFDFGELEEAIVLQGIKIRNDEGSKPAATLEMFPSWPIRFQQTPRVVASLTSPSLTNPYGGSKSGGESSDSGSTEIQFETDSPLSIKASSSSDHHHNHGFDQIQQQQEIATTDEAALRTGTSQNQSKAKSPQQKKKGAVSTSEKTLDPKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLRLSNLEQDLQRARSQGLFLGCGGGNISPGAAMFDMEYARWLEEDQRQLTELRGGLHAALADNELRVIVDGYLYHYDELFRLKEVAVKSDVFHLIKGIWTSPAERPFIWIGGFKPSELITMLTQQLEPLAEQQIVGIMELRQSSHQAEEALSQGHEQLHHCIVDTIAGGPVIDGVQQMVAAMARISNLEGFVHQADNLRQQTLHQLCRILTVRQSARCFIVIGEYYGRLRALSSLWASRPRENLMNDDNSCQATTELQMVQPSQSHFSSF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi30g00003 490 Pfam bZIP transcription factor 190 231 IPR004827 GO:0003700|GO:0006355
Vivi30g00003 490 Coils Coil 209 236 - -
Vivi30g00003 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 232 IPR004827 GO:0003700|GO:0006355
Vivi30g00003 490 SMART brlzneu 186 248 IPR004827 GO:0003700|GO:0006355
Vivi30g00003 490 MobiDBLite consensus disorder prediction 92 193 - -
Vivi30g00003 490 Gene3D - 189 238 - -
Vivi30g00003 490 MobiDBLite consensus disorder prediction 143 180 - -
Vivi30g00003 490 Pfam Seed dormancy control 268 343 IPR025422 GO:0006351|GO:0043565
Vivi30g00003 490 MobiDBLite consensus disorder prediction 92 131 - -
Vivi30g00003 490 FunFam BZIP family transcription factor 189 238 - -
Vivi30g00003 490 PANTHER TRANSCRIPTION FACTOR TGA9 127 462 - -
Vivi30g00003 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700|GO:0006355
Vivi30g00003 490 SUPERFAMILY Leucine zipper domain 190 232 IPR046347 GO:0003700|GO:0006355
Vivi30g00003 490 ProSiteProfiles DOG1 domain profile. 251 459 IPR025422 GO:0006351|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi30g00003 162 490 bZIP Transcription Factor Family AT1G08320 67.771 1.11e-164 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi30g00003 DOG1 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi30g00003 K14431 - gmx:100101904 656.751