Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi305g00016 ATGAAGCCTTCTTTGGGTCAGGCTCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTATTTTCTGAAAAGGAAGTTGCATGCTACTGCGAAGACTTTTATGACAGAAGGGAAAGTTTCTACTGATCCAGTAGCAATTGATGCACCTGGCGGATTTCTTTTTGAGTGGTGGTCGGTCTTTTGGGATATATTCATCTCGAGGACAAATGAGAAACATTCGGAGGCTGCTGTATCTTACATTGAGACCCAGCAAACCAAGGCCAGGGAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAGCGCAACCAGTTACAACGAAGAGATCCTAATCATCCTGCACTCGGTGGTTCCTTAAACGCCATGAACCCTGAAGGTATGATGGGGCAGCCACCAGCTAGTGTGTTGGCCATGAAAATGTATGAAGAGCGAATGAAGCACCCTCATTCAATGGATTCAGAGGCCTCTCCAGCTCTTATTGATGCAAATAGGATGGCTCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCATGGTAATTCAGGGAATATGTCCACGGCATTGCAGCAAATGCAGGCACGGTCATCTTTGAATGCTGATATCAAAGGAGAAGTTAACATCGGCGCCAGTCCAAAGAATTTGCCTATGGATTCATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGTTAGGCAGTGCAGGATTAAATCAAGGAGTTACTGGTCTTCCGTTGAAGGGATGGCCTCTAACTGGAATTGATCAACTAAGACCTGGTTTGGGTGTACAAGTTCAGAAGCCTAATTTGACACCACAAAACCAATATCTTTTGGCATCACAACAGCAACAGGTCTTGGCACAGGCTCAGGCACAAAACAACCTTGGAAATTCTAATTATGGTGATATGGATCCGCGTAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTAACAGGAATGATGGATCTATTTGCTCCCAAATGCAAGCAGGTTCACCTAAGATGAAGATGACCCAGTCCCAACAATCATTATCTCAGCAGCAGGAGCAATTGCAGCAGCAGCATCAACTTCAACAGAGTAACAGAAAACGAAAGCAAGCTTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACTGCTGGTCCTTCACCTAATTCGCCGTCATCAACACACACACCTGGTGATGTATTAAATACAGCAAGCAGCTTGCAGAATGCTAACAGTGTGCAAAAGAGCATGATGATGTATGGTGCAGAGGCAACAGGAGGCCTGGCATCATCATCAAATTTACTTGATGATATAGAACGCTTTGGAGATGTTGGTGCTTTAGATGATAATGTGGAATCTTTTCTATCAAATGATGGAGGAGATGGTGGCAATCTCTACGGGGCTATAAAACAAAGTCCGGCTGAGCAACAAAAAGAATCTTCAAAAGGTTTCACCTTCGCTGAATTTGGTTGCATAAGAACAAGGAACACAGTTACTTGCTGTCACTTTTCTTCAGATGGAAAGTTGCTAGCCAGTGCTGGGGATGACAAGAAGGTTGTCCTGTGGAATATGGACACTTTAAGGACAGAGACCACTCCTGAAGAACACAAATTGGTTATTACAGATGTTCGTTTTAGACCAAATTCATCCCAGTTGGCGACTGCCTCATGTGACAAATCTGTGCGCTTATGGGACGCTGCCAATCCAACCTACTGTGTTCAAGAATATAGTGGGCACAGTTCAGCTATTATGTCCCTTGATTTTCACCCTAAGAAGACTGATATTTTCTGCTTCTGCGATACAGAAAATGAAATTCGGTATTGGAACATTACTTCATCCTCTTGTACCCGAGTATCCAAGGGAGGTAGTGCTAAAGTGAGGTTTCAGCCTCGTTTGGGACAGTTACTTGCAGCAGCTTCTGATAAAGTGGTGTCTATTTTTGACGTCGAAAGTGACAGACAAATTTACTCACTCCAGGGTCATCCTGAACCGATAAACAATATTTGCTGGGATTCTACTGGAGATATGTTAGCATCTGTTAGTCCAAATTGGGTGAAAATCTGGAATTTGACATCAGGAGATTGCGTTCAGGAGCTCAACTCCACTGGAAACCAGTTTTATTCCAGTGTTTTTCATCCAAGCTATTCAACTTTATTAGTAGTCGGAGGGTTTTCGTCCATAGAGTTGTGGAACATGGCTGAGAACAAGAGCATGACAATTTCTGCACATGAGAATGTGATTTCTGCATTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCCGCGAGTCGTGACAACGCCGTAAAGTTGTGGAAATAA 2352 0.4337 MKPSLGQAQSNWEADKMLDVYIHDYFLKRKLHATAKTFMTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAAVSYIETQQTKAREQLQMQQLQLMQQRNQLQRRDPNHPALGGSLNAMNPEGMMGQPPASVLAMKMYEERMKHPHSMDSEASPALIDANRMALLKSATSHQGQLVHGNSGNMSTALQQMQARSSLNADIKGEVNIGASPKNLPMDSSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLTGIDQLRPGLGVQVQKPNLTPQNQYLLASQQQQVLAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLNAKDGQSNRNDGSICSQMQAGSPKMKMTQSQQSLSQQQEQLQQQHQLQQSNRKRKQASSSGAANSTGTGNTAGPSPNSPSSTHTPGDVLNTASSLQNANSVQKSMMMYGAEATGGLASSSNLLDDIERFGDVGALDDNVESFLSNDGGDGGNLYGAIKQSPAEQQKESSKGFTFAEFGCIRTRNTVTCCHFSSDGKLLASAGDDKKVVLWNMDTLRTETTPEEHKLVITDVRFRPNSSQLATASCDKSVRLWDAANPTYCVQEYSGHSSAIMSLDFHPKKTDIFCFCDTENEIRYWNITSSSCTRVSKGGSAKVRFQPRLGQLLAAASDKVVSIFDVESDRQIYSLQGHPEPINNICWDSTGDMLASVSPNWVKIWNLTSGDCVQELNSTGNQFYSSVFHPSYSTLLVVGGFSSIELWNMAENKSMTISAHENVISALAQSPVTGMVASASRDNAVKLWK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi305g00016 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 783 - -
Vivi305g00016 783 Coils Coil 93 113 - -
Vivi305g00016 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 629 IPR001680 GO:0005515
Vivi305g00016 783 Pfam LisH 16 42 IPR006594 GO:0005515
Vivi305g00016 783 Coils Coil 347 367 - -
Vivi305g00016 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 783 IPR044716 GO:0003714
Vivi305g00016 783 CDD WD40 509 783 - -
Vivi305g00016 783 SMART Lish 14 46 IPR006594 GO:0005515
Vivi305g00016 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Vivi305g00016 783 SMART WD40_4 703 742 IPR001680 GO:0005515
Vivi305g00016 783 SMART WD40_4 537 576 IPR001680 GO:0005515
Vivi305g00016 783 SMART WD40_4 580 620 IPR001680 GO:0005515
Vivi305g00016 783 SMART WD40_4 662 700 IPR001680 GO:0005515
Vivi305g00016 783 SMART WD40_4 623 659 IPR001680 GO:0005515
Vivi305g00016 783 SMART WD40_4 744 783 IPR001680 GO:0005515
Vivi305g00016 783 SMART WD40_4 499 534 IPR001680 GO:0005515
Vivi305g00016 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 543 IPR001680 GO:0005515
Vivi305g00016 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Vivi305g00016 783 Gene3D - 480 635 IPR015943 GO:0005515
Vivi305g00016 783 Pfam WD domain, G-beta repeat 665 700 IPR001680 GO:0005515
Vivi305g00016 783 Pfam WD domain, G-beta repeat 507 534 IPR001680 GO:0005515
Vivi305g00016 783 Pfam WD domain, G-beta repeat 748 783 IPR001680 GO:0005515
Vivi305g00016 783 Pfam WD domain, G-beta repeat 543 576 IPR001680 GO:0005515
Vivi305g00016 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Vivi305g00016 783 Gene3D - 636 783 IPR015943 GO:0005515
Vivi305g00016 783 SUPERFAMILY WD40 repeat-like 506 783 IPR036322 GO:0005515
Vivi305g00016 783 MobiDBLite consensus disorder prediction 323 414 - -
Vivi305g00016 783 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Vivi305g00016 783 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Vivi305g00016 783 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Vivi305g00016 783 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Vivi305g00016 783 PRINTS G protein beta WD-40 repeat signature 770 783 IPR020472 -
Vivi305g00016 783 MobiDBLite consensus disorder prediction 302 414 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi305g00016 582 782 Miscellaneous Gene Families AT5G08390 22.330 7.37e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi305g00016 WD40 0.041 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi305g00016 - - gmx:100799686 1191.41